Protein Info for PfGW456L13_4371 in Pseudomonas fluorescens GW456-L13

Annotation: O-antigen biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 974 TIGR04440: glycosyltransferase domain" amino acids 16 to 220 (205 residues), 119.2 bits, see alignment E=1e-38 PF13641: Glyco_tranf_2_3" amino acids 704 to 938 (235 residues), 40.4 bits, see alignment E=4.9e-14 PF00535: Glycos_transf_2" amino acids 705 to 881 (177 residues), 51.8 bits, see alignment E=1.4e-17

Best Hits

KEGG orthology group: None (inferred from 79% identity to pfo:Pfl01_1517)

Predicted SEED Role

"O-antigen biosynthesis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QQ55 at UniProt or InterPro

Protein Sequence (974 amino acids)

>PfGW456L13_4371 O-antigen biosynthesis protein (Pseudomonas fluorescens GW456-L13)
MQGKNNSEHGLALNEQLTVVLMSHERPAFLRRAARFYSGLPCRILVLDSSTEGQPSLAGQ
FENVDYQHVPQFGYWGVRAKLAFGVEQVTTPFMVFAADDDFHVHDALRAAVAFMQANPDY
GLCHGYSMMYLSQPNSVSYFRRDKKVCEDYSSEHAEERVLDYMHQYLPPFYAVQRTDLVR
DWYQVMPQDTSFQWQEIGHTYYMLARGKARILPIPYVVREMNYGYSDHNTEIFHTLAHTD
ARTVAEREAFAAFLFGLPTQVQSEDPEQGRQFALQSFEALADSLRTGRALTTELIIESAW
TSVEKGPVRRFGPKQYVEMPFYNQAFFDQLTQFEFLLHAMPAGRVQLAGLEGIWTRQQSL
MLARNNDTPESVVDRLWQAHDSNIFNRAVVKRLVAQLELLGEDEEAQTLGDWAARLEAVS
VEGNRATFDKMLSGRLLKWLSPRQPDEQEAESIARHLAANDGGPQFGIFLLDLDNDIDKL
QVSLDSLLEGHSKAFRIVVFTTGEAPAATTAQNTLHFVRVTQSNYVDKLNQGARQSPCDW
LMLAEAGDEFTAGGLLRASLELLSAADCRAVATDEIQRTSEGALVDVFRPGFNLDLLQSL
PALMARHWLIRREVFLEVGGYQPDFSKALEFDLLLRIIEQGGLNGLAHLDEPLVIARAPV
LEENADERLALLRHLGNRGYKAKITSTAPGTWQIDYRHTERPLVSIIVPAGDNLSALQQC
LQAVLLRTRYIQYEVLVAINQYQSAEVNDWLGTYQHPKVSVLRTDQRMSDAALYNAASQQ
AQGEYLILLAADSEVVNPNWLESLLNHAQRPEVGVVGPKLIDRDGKVTQAGLILGMNGGV
GSAFVGEKHDAEGYLHRLALEQNYSAVSMVCLMVRKALFDELDGLDSVTFADGLSDVDLC
LRAGQAGYLTVWTPLVQVIHSGEVPKAPQALDALRDKWAPAFAQDQAYNANLALSGKGFA
LGESASVNWAQMLG