Protein Info for PfGW456L13_4345 in Pseudomonas fluorescens GW456-L13

Annotation: Flagellar hook-length control protein FliK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 PF02120: Flg_hook" amino acids 316 to 398 (83 residues), 69.5 bits, see alignment E=8.7e-24

Best Hits

KEGG orthology group: K02414, flagellar hook-length control protein FliK (inferred from 70% identity to pfo:Pfl01_1544)

Predicted SEED Role

"Flagellar hook-length control protein FliK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QU03 at UniProt or InterPro

Protein Sequence (450 amino acids)

>PfGW456L13_4345 Flagellar hook-length control protein FliK (Pseudomonas fluorescens GW456-L13)
MPVTPDILFQASRQAKTQAGSANPPAQTSEPGGKAASFADVYADQAQSKPTALADASLKP
GRDKTSDVAGTKDAGDDKSAAEEPVVADGGKSLPAKSSVPAGDKVAGDDASDADPAPVVD
AALLDPALDPTLQSIVSAPVAPAVVDTVQPVVDAPVAATATATAVLAPALATAEGDFDPS
TDPLDALPAVRLAMEQGGHVSASSQAQPKAAPTQAQAQADAELTPEQNFAAGMATLLDVK
GDKSDTSPGEDKAFSGLIDDGLKDLKSASSDTRVDDFANRLAALTQAATPKTANALPVNQ
PIAMHQSGWTEEVVNRVMYLSSANLKAADIQLQPAELGRLDIRVNMVPDQQTQVTFMSAH
PGVREALDGQVHRLRDMFAQQGMGQVDVNVSDQSRGSQQGQEQARQGQSGRTSASGGRLD
SMDDDITPSVAEAAVNTTSVIGSSAVDYYA