Protein Info for PfGW456L13_4131 in Pseudomonas fluorescens GW456-L13

Annotation: Rhs family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1110 PF20148: DUF6531" amino acids 52 to 124 (73 residues), 69.1 bits, see alignment 5e-23 TIGR01643: YD repeat (two copies)" amino acids 241 to 269 (29 residues), 20.8 bits, see alignment (E = 4.3e-08) amino acids 349 to 383 (35 residues), 35.1 bits, see alignment (E = 1.2e-12) amino acids 411 to 444 (34 residues), 28.9 bits, see alignment (E = 1.1e-10) amino acids 452 to 492 (41 residues), 22.8 bits, see alignment (E = 9.6e-09) amino acids 494 to 535 (42 residues), 33.8 bits, see alignment (E = 3.2e-12) amino acids 647 to 678 (32 residues), 27 bits, see alignment (E = 4.7e-10) amino acids 668 to 701 (34 residues), 21.6 bits, see alignment (E = 2.3e-08) amino acids 865 to 886 (22 residues), 16.9 bits, see alignment (E = 7.1e-07) amino acids 871 to 903 (33 residues), 30.8 bits, see alignment (E = 2.9e-11) PF05593: RHS_repeat" amino acids 349 to 383 (35 residues), 37.5 bits, see alignment (E = 3.6e-13) amino acids 411 to 444 (34 residues), 32.3 bits, see alignment (E = 1.5e-11) amino acids 452 to 484 (33 residues), 28.5 bits, see alignment (E = 2.4e-10) amino acids 494 to 529 (36 residues), 34.4 bits, see alignment (E = 3.4e-12) amino acids 515 to 553 (39 residues), 34.4 bits, see alignment (E = 3.4e-12) amino acids 627 to 661 (35 residues), 28.7 bits, see alignment (E = 2.1e-10) amino acids 647 to 678 (32 residues), 24.4 bits, see alignment (E = 4.8e-09) amino acids 774 to 805 (32 residues), 28.6 bits, see alignment (E = 2.2e-10) amino acids 871 to 905 (35 residues), 35.9 bits, see alignment (E = 1.2e-12) PF03527: RHS" amino acids 954 to 987 (34 residues), 52.9 bits, see alignment (E = 4e-18) TIGR03696: RHS repeat-associated core domain" amino acids 979 to 1058 (80 residues), 84.3 bits, see alignment 6.7e-28

Best Hits

Predicted SEED Role

"Rhs family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QSE6 at UniProt or InterPro

Protein Sequence (1110 amino acids)

>PfGW456L13_4131 Rhs family protein (Pseudomonas fluorescens GW456-L13)
MFDPQEVLACPASGPLILCPGRHERHEDAARQAKNPNGVSIDTAERTATHNGPVSMVTGE
ELLTLTDGTLDGILPFDFTRLYRTSAVEIDSGLGFGWSHSLSQHLELHSERVLWIDPENR
RTPFPRPTAARPVIHNSLSRAAIYLGEEPDELILALAGHRARFYHFHDGRLSTISDAYGN
RLTVQRDRCDRIQRLDNGADRALLLRYDVKHLVAVDYQVFQRGDCEANTWRTEQTLVSYR
YDARQRLIEATNAAGESERYDYDEQHVILQRQLAGGASFFWAWERSGKAARCIHHWASFS
QMEARYAWDDKGCVTVNNADGSEEVYVHDNRARLVRQVGPDGGELHKAYDDQGRLIAEQD
ALGAVTEYHYDEAGRLIARRAPDEAPMTCNYRHGFLRTLTRGQATWTCQRNAQGDITAVS
DPDGQITRYFYDPKGRLLTIRFPDQSGHRFVWNALGQLLEETLPDGAQRAFSYDVLGRRI
TRQDEHDAVTGYEWDAVGRLTRITLPTGACRAYRYNAYGQVTAETDELGRVTRYEYADDL
HLVSRRINPDGSTLKYGYDHAQLLLTEFENEVGDSYRLDYTPGGLIRQETGFDGRRTTYA
YDGNGQLLKKTEFGDDGSQLVTQYQRDSAGRLLLKTLPDGIKVEYHYDNSGRLVRIDDGQ
GHPLAFEYDRQGRLITEHQGWGTLRYGYDACGRLKRLRLPDDCVLVYHHAKGGVLTAIDL
NGTRLTCHRFVGGREQQRQQGLLLSDYAYDEQGRLQVHCVSQKQRALYRREYAYSAKGNL
LQITDSRHGQRHYQYDAFDRLTGVRHDRDPFAENFTHDPAGNLLIRGRPGPFVLQGNRLH
RHCNSHYDYDAFGNLIRERRGMPPQVTQYTYDSQHRLISVSTPDGKSISYRYDAFGRRIR
KTIDSQTTQFFWQGDQLIAESAPEHYRSYVYEPGSFRPLALLDGKGRADARPLYYQLDHL
GTPQELTNYGGAIVWSAKYTAHGKLREVSQGDGERLKQPLRFQGQYFDAESGLHYNRHRY
YHPDIGRYLTQDPVMLAGGLNPYRYTRNPTGWVAPLGLGGNCPQENKPGCSVPYGQGRAK
VDEGEPDAPSPKPSNNYGYCGDSLEPRGVF