Protein Info for PfGW456L13_4054 in Pseudomonas fluorescens GW456-L13

Annotation: Aerotaxis receptor Aer

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 530 transmembrane" amino acids 158 to 177 (20 residues), see Phobius details amino acids 183 to 202 (20 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 29 to 117 (89 residues), 40 bits, see alignment E=1.9e-14 PF00989: PAS" amino acids 30 to 117 (88 residues), 38.2 bits, see alignment E=2.5e-13 PF13426: PAS_9" amino acids 32 to 118 (87 residues), 40 bits, see alignment E=8.1e-14 PF08447: PAS_3" amino acids 40 to 120 (81 residues), 54.6 bits, see alignment E=2.2e-18 PF00015: MCPsignal" amino acids 329 to 496 (168 residues), 155.9 bits, see alignment E=2e-49

Best Hits

KEGG orthology group: K03776, aerotaxis receptor (inferred from 97% identity to pfo:Pfl01_1833)

Predicted SEED Role

"Aerotaxis receptor Aer"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293Q4A7 at UniProt or InterPro

Protein Sequence (530 amino acids)

>PfGW456L13_4054 Aerotaxis receptor Aer (Pseudomonas fluorescens GW456-L13)
LKALRIKKAMRNNQPITQRERTFPAQQRLISTTDAKGMITYCNDAFVEISGFSREELIRA
PHNLVRHPDVPAAVFAHMWDTLKQGLPWMGIVKNRCKTGDHYWVNAYVTPIFEGNQVIGY
ESVRVKPTAEQIRRAEALYQRINQGKSAIPSSDKWLPILQDWLPFILVSQLSFMIGASLN
SHWGFALAAGLSVPLGLMGLQWQQRGLKRLLRLAEQTTSDPLIAQMYTDSRGAQARLEMS
ILSQEARLKTCLTRLQDTAEHLTVQARQSDALAHNSSSGLERQRVETEQVATAVNQMAAT
TQEVASHVQRTADATQEANRLTGRGRDIAGETREAIQRLSVVVGETGVTVTQLAKDSNEI
GGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTSESTGQIHALI
AKLQHTAGTAVQTMEAGHRQAEEGVARVLEADQALVGISEAVANITDMTTQIAAATEEQS
AVAEEISRNISNISELADQTSEQAQNSALLSEELTKTANTQYSLVERFNR