Protein Info for PfGW456L13_3985 in Pseudomonas fluorescens GW456-L13

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 547 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 68 to 81 (14 residues), see Phobius details amino acids 88 to 109 (22 residues), see Phobius details amino acids 120 to 138 (19 residues), see Phobius details amino acids 144 to 161 (18 residues), see Phobius details amino acids 168 to 186 (19 residues), see Phobius details amino acids 192 to 209 (18 residues), see Phobius details amino acids 215 to 235 (21 residues), see Phobius details amino acids 248 to 270 (23 residues), see Phobius details amino acids 279 to 297 (19 residues), see Phobius details amino acids 310 to 332 (23 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details amino acids 365 to 385 (21 residues), see Phobius details amino acids 397 to 418 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QSQ3 at UniProt or InterPro

Protein Sequence (547 amino acids)

>PfGW456L13_3985 hypothetical protein (Pseudomonas fluorescens GW456-L13)
MRDILTNKIPIIVLALFFAVLLSGVFLPVYSDEVMTKFRVARLFLEDGNAVTLYPQCTTT
AGRTVSWVFYPAGILLSAIYAHLGPFGLRVSGISLSLIWFALLAYWCLAQARDVGGALQR
FAGLVAVASLGVLPYLWVLSRPEQLLMLPILVLCLLALFFKEQKSARAQVAMTVGLALLL
TLFFYAHPKSMFYAPFALAAVWFATATYHKAIRYGLWLFVVVLCIQNFHYFSALAGCQDA
PNIQKMLAANTLLPGMLFSAPAEFVSAAYNNLISFPDRVLIHLTFNATFQSGWLPPMVGS
FEELPYLNLAIYYFLYAFIIGIHVVSIPVFLFQVVRRQVSASVVLALLLVGADLINAFFY
NIQNFYAGIQFMPVSIIITALLMHSRRAVKPSNIPTLVAYSLLLLLSMASMVTLLALVTP
DITRNSSFAQSSLPGQPLSIPVLGTQLHLDSINKLGASCGIPAESAENVVVDHMTYFAFL
RDKKPIHVLYVSEIGYGGDLSNGRLLPFLKGLNSPGLVTRCEWVPYEFRQAQEKDDMGYC
CVNFGKI