Protein Info for PfGW456L13_3950 in Pseudomonas fluorescens GW456-L13

Annotation: Sensory box/GGDEF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1092 PF00989: PAS" amino acids 34 to 141 (108 residues), 26.3 bits, see alignment E=2.2e-09 amino acids 159 to 248 (90 residues), 28.7 bits, see alignment E=3.9e-10 amino acids 413 to 458 (46 residues), 25 bits, see alignment (E = 5.5e-09) amino acids 538 to 647 (110 residues), 34.7 bits, see alignment E=5.7e-12 TIGR00229: PAS domain S-box protein" amino acids 42 to 153 (112 residues), 36.4 bits, see alignment E=5.1e-13 amino acids 155 to 278 (124 residues), 48.3 bits, see alignment E=1.1e-16 amino acids 280 to 407 (128 residues), 25.3 bits, see alignment E=1.4e-09 amino acids 409 to 532 (124 residues), 65 bits, see alignment E=7.1e-22 amino acids 533 to 656 (124 residues), 78.3 bits, see alignment E=5.6e-26 PF08447: PAS_3" amino acids 52 to 140 (89 residues), 45.2 bits, see alignment E=3.3e-15 amino acids 306 to 393 (88 residues), 41.7 bits, see alignment E=3.9e-14 PF13426: PAS_9" amino acids 422 to 524 (103 residues), 32.1 bits, see alignment E=4e-11 amino acids 547 to 648 (102 residues), 40.3 bits, see alignment E=1.1e-13 PF13188: PAS_8" amino acids 537 to 582 (46 residues), 28.2 bits, see alignment (E = 4.9e-10) TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 658 to 826 (169 residues), 156 bits, see alignment E=7.3e-50 PF00990: GGDEF" amino acids 661 to 822 (162 residues), 165.2 bits, see alignment E=3.9e-52 PF00563: EAL" amino acids 844 to 1081 (238 residues), 257.8 bits, see alignment E=3.1e-80

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_1887)

Predicted SEED Role

"Sensory box/GGDEF family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QSY7 at UniProt or InterPro

Protein Sequence (1092 amino acids)

>PfGW456L13_3950 Sensory box/GGDEF family protein (Pseudomonas fluorescens GW456-L13)
MPKSVDRIPPMPRIQALDPKSSEQSWESAPQLLAALNGARLGAWYWDIERGKISWSRGTQ
ALFGFDPRKPLPSDLEYLDLLPPEDRAKTVRAFHAVIAGAPLEQAMHHRIRWPDGSLHWL
EISGSLLPDKHGRPRMIGVIREITHQRQREQALSSSEKRFATLFHLCPNMVLLTRQEDGL
ITEANQYFESLFGWPVQNAIGRTTLELGLWVHPEQRAELVKATKAKGDLVSMEVQFRASN
GQVHDGILSAQKVELEGQPYLLSTFLDTTERKVAEQALKDSQERLDLALDSAQLGTWDWH
IPSGMLYGSARAAQLHGLDAKPFHESFDEFFEGVPGEERDTMRDAYRSLREGPAGNYQLT
YRVQLPDGTSRYLESRARLYRDDNGVPVRMAGTLLDITDQVEREQRLVASEEKFATLFQV
SPDPICVTRQDSGQFIEINSSFTQTFGWSTADVIGRSADEIGLWDASAKSLRRIEQVIRE
QGLNNVAILVQHKEGQTLTCVISSRQISVGDQPCIVTTLRDITQQQRSEAALKASEEKFA
KAFHSSPDAITITERDTGRYLEVNDGFCRLTGYRAEEVVGRTVYQVGIWAEEKQRSALLA
ELQIKGRVHHQEMLGRNKRGELLTVEVSVEPITLNETACLLLTARDVSLLKNAEAQIRHL
AYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALMFLDLDHFKHINDSLGHPVGDTVLK
IITARLEASVRMEDTVARLGGDEFVVLLSGLEGSRSEVSEQVREVADTIRELLSEPMFLD
GQRLQVTPSIGIALIPDHGSTPTDLLKRADIALYRAKDSGRNTTQMYHNTMQKAASERLR
METDLRLALSRGEFRVHYQPQVDARGDRIVGAEALVRWNHPELGPQSPAEFIKVLEDSGL
ILEVGTWILDEACQAFKRLIDDGLVNPYKFSLCVNISPRQFRQNDFVERVENSLNTYGLP
CSLLKLEITEGIVIQNLEDTISKMRRLKKLGVSFAMDDFGTGYSSLTYLKRLPVDTLKID
KSFIRDATSDPNDAEIIRAIVAMAHSLDLKVIAEGVETAEQLEFLQGLECHFYQGYLHSL
PLPVEEFQKLLK