Protein Info for PfGW456L13_3878 in Pseudomonas fluorescens GW456-L13

Annotation: FIG00963002: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 734 TIGR03549: YcaO domain protein" amino acids 2 to 727 (726 residues), 1493.5 bits, see alignment E=0 PF02566: OsmC" amino acids 32 to 126 (95 residues), 35.5 bits, see alignment E=1.7e-12 TIGR00702: YcaO-type kinase domain" amino acids 159 to 551 (393 residues), 318.3 bits, see alignment E=7e-99 PF02624: YcaO" amino acids 205 to 540 (336 residues), 217.3 bits, see alignment E=5.2e-68 PF18381: YcaO_C" amino acids 557 to 728 (172 residues), 240.5 bits, see alignment E=1.6e-75

Best Hits

KEGG orthology group: K09136, ribosomal protein S12 methylthiotransferase (inferred from 95% identity to pfo:Pfl01_2710)

Predicted SEED Role

"FIG00963002: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QTJ1 at UniProt or InterPro

Protein Sequence (734 amino acids)

>PfGW456L13_3878 FIG00963002: hypothetical protein (Pseudomonas fluorescens GW456-L13)
MEIKVNFLDNLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCE
TRNIPTENIRLSQNNIVDPENRYNQIFKIQVELPADISAKDRQGILRSIDRCTVKKVVQT
GPEFVIEEVENLDADAQALLMPHSTSEAGTYIVGKDLPLEQTIANMSGILADLGMKIEIA
SWRNIVPNVWSLHIRDAHSPMCFTNGKGATKEGALASALGEFIERLNCNFFYNDQFWGED
IANAAFVHYPDERWFKPGPKDELPTEILDEYCLKIYDRDDELRGSHLYDTNSGNTQRGIC
SLPFVRQSDNEVVYFPSNLIENLFLSNGMSAGNTLAEAQVQCLSEIFERAVKREILEGEM
ALPDVPQEVLAKYPGILAGIQALEEQGFPVLVKDASLGGEFPVMCVTLMNPRTGGVFASF
GAHPSLEVALERSLTELLQGRSFEGLNDLPQPTFEGQAVTEPNNFVEHFIDSSGVVSWRF
FSAKPDFEFVEWDFSGQGENSNTEEAATLFGILEDMGKEVYMAVYEHIGAKACRILVPGY
SEIYPVEDLIWDNTNKALQFRADILNLHSLSKVGLRSLAQGLENSELDDYTDITTLIGIE
FDDNTPWGKLTILELRLLIYLALQKFDQAKDLVEAFLQYNDNTVERGLFYQAVNVVLEMQ
LDDDLELSDYEVNFRRMFGNERMDAAIGSVDGSVRFYGLTPTSMKLEGLDRHLRLIESYK
KLHMARARVSALFN