Protein Info for PfGW456L13_3871 in Pseudomonas fluorescens GW456-L13

Annotation: Pirin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 PF02678: Pirin" amino acids 10 to 119 (110 residues), 119 bits, see alignment E=1e-38 PF17954: Pirin_C_2" amino acids 146 to 231 (86 residues), 97.8 bits, see alignment E=3.4e-32

Best Hits

Swiss-Prot: 50% identical to Y1773_SYNY3: Putative quercetin 2,3-dioxygenase sll1773 (sll1773) from Synechocystis sp. (strain PCC 6803 / Kazusa)

KEGG orthology group: K06911, (no description) (inferred from 93% identity to pfo:Pfl01_1955)

Predicted SEED Role

"Pirin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QR71 at UniProt or InterPro

Protein Sequence (240 amino acids)

>PfGW456L13_3871 Pirin (Pseudomonas fluorescens GW456-L13)
MLTLRKASDRGLANHGWLKSFHTFSFASYRNPKEQGFSDLLVINDDRVAAGKGFGQHPHR
DMEIFSYVLEGALEHKDTLGTGSVIRPGDVQLMSAGSGVAHSEFNHSGTRPVHFLQIWIV
PDVSGAKPRYQQEHFSPQKKRGRLQLIISPDGAKGSLKVRQDARVYAGLIDGKESATLEL
AANRYAYVHVARGSVELNGVLLQEGDGVRVREEQVLTLSNGVDAEVLVFDLRPQELPEMP