Protein Info for PfGW456L13_3868 in Pseudomonas fluorescens GW456-L13

Annotation: Disease resistance protein / Tetratricopeptide repeat-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 934 PF00486: Trans_reg_C" amino acids 28 to 102 (75 residues), 62.7 bits, see alignment E=2.8e-21

Best Hits

KEGG orthology group: None (inferred from 66% identity to pfs:PFLU3708)

Predicted SEED Role

"Disease resistance protein / Tetratricopeptide repeat-containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QTI1 at UniProt or InterPro

Protein Sequence (934 amino acids)

>PfGW456L13_3868 Disease resistance protein / Tetratricopeptide repeat-containing protein (Pseudomonas fluorescens GW456-L13)
LTLSPEQAVHFGPYRVYPGQRLVMEADQPLRLGRRAMDILLILLEHAGNVVSKQQLIARV
WPNSVVEDINLRVHMAALRKALGDGQAGQRYIVTVAQRGYSFVAPHSLEQAEQPPAPEAC
APSRHNLPVRRTRMIGRQTLVDNLVVQLPRQRFITLVGPGGIGKTTVALRVAEQMIGRYR
DGIRLLDLAPINCPLMIDGHLATLLELALHNDAPLSGIADCLRDRQMLLVIDNCEHLVDA
IAHLCETILRSAPHVHILATSRESLRAEGEFVQRLESLDCPPPIAVLDRAQAMTFSALQL
FVERAMASHDSFELTDNELPLLIDICHRLDGIPLAIELAAAQVGNFGLPGLLTQLQSNFR
VLTQPCQTPLARHQTLRATLDWSFELLSACEKTCLRRLSVFRGGFTLESAAAVIVGEHIE
PREVFGSITQLVAKSLLNVEVGDEDVYYRLLDTTRSYALEKLAQTTDLPGTRERHAERCL
ATMQQAQDDWEKTSTGLWLERYGRALEDIRAALDWGLHGQGPQALAIRLAATSTPLWQEL
SLLKEHGGYVRKALALLEQSAEPCPRLQMALKLALGSACYHVKGGSSETVGAFVSARALA
SQLNDVAGQLRAISGHLAVNLSCGQYQMALEQSRQFDHLGLHDDALMSLSMHRLRVLALH
FSGNQHQAGEHAEQVLQRMAHSGHLNRFTHGFGVQYDQSVAALTLHARILWLQGQPEQAW
RTARQALDIALQINHGTSICYTLALAGCLIAHYNGDTRSARELLRLLLQQARKHSVLLFH
DWAQHYARVIGGIDVQPIGRQSVGLIKDIMVTLDSTCVDDDLLERAQSGVSDWSTAEILR
ARARTLLATDCPLQTATAETMLLKALNVAKAQGALAWELRSATSLAQLWQRQGDPQRAHQ
LLAPIYQRYTEGFATPDLMTVRRLLDELQCHLPA