Protein Info for PfGW456L13_3852 in Pseudomonas fluorescens GW456-L13

Annotation: lytic transglycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF13511: DUF4124" amino acids 11 to 60 (50 residues), 25.9 bits, see alignment E=9.7e-10 PF01464: SLT" amino acids 73 to 168 (96 residues), 102.6 bits, see alignment E=1e-33

Best Hits

KEGG orthology group: None (inferred from 80% identity to pfo:Pfl01_1974)

Predicted SEED Role

"lytic transglycosylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QT63 at UniProt or InterPro

Protein Sequence (202 amino acids)

>PfGW456L13_3852 lytic transglycosylase (Pseudomonas fluorescens GW456-L13)
MKTLTAGLLGFLVLASAAQADVFVSVDANGGYVLSNVHRPGRHYERVIREPDAPVVSLDQ
QPQMIAAQPYAELVAAAATANELPAALLHAVIKTESSYNARATSPKGARGLMQLMPATAR
EMGVTNVYDPKANIQGGARYLKRLMTMFDNDIRLAVAAYNAGPQAVLSRGNVVPPFAETQ
RYVPSVLKQYRRLQGLPADAPL