Protein Info for PfGW456L13_3821 in Pseudomonas fluorescens GW456-L13

Annotation: benABC operon transcriptional activator BenR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 319 PF14525: AraC_binding_2" amino acids 44 to 192 (149 residues), 72.8 bits, see alignment E=6.1e-24 PF02311: AraC_binding" amino acids 56 to 180 (125 residues), 46.2 bits, see alignment E=7.7e-16 PF12833: HTH_18" amino acids 235 to 317 (83 residues), 66.9 bits, see alignment E=3.4e-22

Best Hits

Swiss-Prot: 60% identical to XYLS3_PSEPU: XylDLEGF operon transcriptional activator 3 (xylS3) from Pseudomonas putida

KEGG orthology group: None (inferred from 74% identity to pfl:PFL_3859)

Predicted SEED Role

"benABC operon transcriptional activator BenR" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QTS5 at UniProt or InterPro

Protein Sequence (319 amino acids)

>PfGW456L13_3821 benABC operon transcriptional activator BenR (Pseudomonas fluorescens GW456-L13)
MMQAQLLSQRSRVFDHADPYAVSGYVNQHVGNHCILMPRAGSPLASLDHRKFASLDLCRI
SYGASVRVTSGALDSIYHLQVLLRGNCLWRGHGQEHYFAPGELLLINPDDPVDLTYSADC
EKFILKVPTRLFESVCDEQRWRYPGQGVRFLENRYQLDELEGFVNLLAMICQEAESTEQI
PRVQEHYTQIIVSKMLSLMKTNVSRLELGSQTATFEAIADYIANNLKQDIDSEELARQAH
MSLRSLYGLFERNAGLTPKNYLRQKRLERINACLSDPTCNVRNVTEVAMDYGFLHLGRFS
DSYRKQFGELPSDTLKRRH