Protein Info for PfGW456L13_3798 in Pseudomonas fluorescens GW456-L13

Annotation: Cytosine/purine/uracil/thiamine/allantoin permease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 470 transmembrane" amino acids 34 to 56 (23 residues), see Phobius details amino acids 62 to 84 (23 residues), see Phobius details amino acids 104 to 127 (24 residues), see Phobius details amino acids 140 to 162 (23 residues), see Phobius details amino acids 169 to 187 (19 residues), see Phobius details amino acids 201 to 220 (20 residues), see Phobius details amino acids 241 to 264 (24 residues), see Phobius details amino acids 284 to 307 (24 residues), see Phobius details amino acids 328 to 347 (20 residues), see Phobius details amino acids 353 to 378 (26 residues), see Phobius details amino acids 399 to 417 (19 residues), see Phobius details amino acids 436 to 453 (18 residues), see Phobius details PF02133: Transp_cyt_pur" amino acids 20 to 441 (422 residues), 141.2 bits, see alignment E=2.3e-45

Best Hits

KEGG orthology group: K03457, nucleobase:cation symporter-1, NCS1 family (inferred from 94% identity to pfo:Pfl01_3261)

Predicted SEED Role

"Cytosine/purine/uracil/thiamine/allantoin permease family protein" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QR06 at UniProt or InterPro

Protein Sequence (470 amino acids)

>PfGW456L13_3798 Cytosine/purine/uracil/thiamine/allantoin permease family protein (Pseudomonas fluorescens GW456-L13)
MHMSQMSRQDPLIENHTVDYVPLAERHGKARDLFTLWFSTNIAPLPIVTGAMVVQVFHLN
LFWGLLAIALGHMVGGVVIALASAQGPCMGIPQMVQSRGQFGRYGALLIVFFAALIYIGF
FISNIVLAGKSIVGIAPSVPVPASILIGALSATAIGVIGYRFIHTLNRIGTWVMGGALLA
GFLYIFAHDLPADFFTRGGFNLSGWLATVSLGIIWQISFSPYVSDYSRYLPADIGITRPF
FATYLGATLGTILSFTFGAVAVLATPEGTEAMAAVKQSTGWLGPILMVLFLLNIISHNAL
NLYGAVLSIITSIQTFASQWTPSIKVRVVLSGIVLAGCCVVALGASANFISQFIGLILAL
LLVLVPWASINLIDFYLIKRRRYDIASIFRADGGIYGRFNLHAIIAYFIGIIVQLPFANT
SLYVGPYANLVEGADLSWLVGLVVTCPLYYCLATRSQSQESRSAKFGYTD