Protein Info for PfGW456L13_3791 in Pseudomonas fluorescens GW456-L13

Annotation: DipZ protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 395 transmembrane" amino acids 26 to 47 (22 residues), see Phobius details amino acids 60 to 83 (24 residues), see Phobius details amino acids 104 to 130 (27 residues), see Phobius details amino acids 142 to 166 (25 residues), see Phobius details amino acids 182 to 203 (22 residues), see Phobius details PF02683: DsbD" amino acids 1 to 157 (157 residues), 35 bits, see alignment E=2.8e-12 PF08534: Redoxin" amino acids 262 to 375 (114 residues), 53.8 bits, see alignment E=4.1e-18 PF00578: AhpC-TSA" amino acids 263 to 366 (104 residues), 51.3 bits, see alignment E=2.2e-17 PF13905: Thioredoxin_8" amino acids 269 to 364 (96 residues), 41.6 bits, see alignment E=2.6e-14

Best Hits

KEGG orthology group: None (inferred from 86% identity to pfo:Pfl01_2089)

Predicted SEED Role

"DipZ protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QRE9 at UniProt or InterPro

Protein Sequence (395 amino acids)

>PfGW456L13_3791 DipZ protein (Pseudomonas fluorescens GW456-L13)
LTVLSPCILPVVPFLFAGADRTRSSILLTLGGMVLTFALVSSLAVVSSEWVIQASNTGRH
VALAVMVLFALSLISARVGDWLARPFVLLGNRIDPDSRKMSGPLASIMIGVATGLLWAPC
AGPILGVILTSAMLQGANAGTSLLLVAYGAGSALSLGTLIFAGRGLVNRLKPSIPVTGWL
RRGAGVAVLAGAAVIATGANDLLLANTSSEGVNSVEKGVLEAVPKVVDYLVSKVKADSTM
GDAQGAMPSLSGAVEWLNSPALSNEALKGKVVLVDFWTFDCINCKHTLPYVKQWAKKYEK
DGLVVIGVHTPEYGFERIIDNVRAKVKEYGITYPVAIDNNYAIWRNFDNQYWPAHYLIDA
KGQVRYTHFGEGSYDTQEKMIQQLLEEAKAGAPAA