Protein Info for PfGW456L13_3749 in Pseudomonas fluorescens GW456-L13

Annotation: Nitrogen regulation protein NR(I)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 209 PF00072: Response_reg" amino acids 8 to 118 (111 residues), 88.2 bits, see alignment E=6.5e-29 PF08281: Sigma70_r4_2" amino acids 135 to 186 (52 residues), 33.8 bits, see alignment E=3.2e-12 PF00196: GerE" amino acids 143 to 196 (54 residues), 62.8 bits, see alignment E=2.8e-21

Best Hits

Swiss-Prot: 42% identical to TODT_PSEPU: Response regulator protein TodT (todT) from Pseudomonas putida

KEGG orthology group: None (inferred from 65% identity to bgl:bglu_2g00880)

Predicted SEED Role

"Nitrogen regulation protein NR(I)" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QTJ9 at UniProt or InterPro

Protein Sequence (209 amino acids)

>PfGW456L13_3749 Nitrogen regulation protein NR(I) (Pseudomonas fluorescens GW456-L13)
MEIRKPIVYIVDDDKDLRTSLAWLLESVSVQAQCFAGAEEFLSQYDPKQPACLVLDVRMP
ETSGFQLQEILNQRGSTLPTIFVSAHGDIPMSVTAMKNGALDFVEKPYNPQQMIDRIQAA
LKTAVHAQADQQQRQNLQGKLALLTSREREVLMLVIDGKASKVIARELNISVKTVDVHRT
KIKEKMGVSSIAMLVREVLHLPVDEPVRH