Protein Info for PfGW456L13_3729 in Pseudomonas fluorescens GW456-L13

Annotation: alkylhydroperoxidase AhpD domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 172 PF02627: CMD" amino acids 44 to 101 (58 residues), 47.6 bits, see alignment E=6.6e-17 TIGR00778: alkylhydroperoxidase AhpD family core domain" amino acids 58 to 98 (41 residues), 48.4 bits, see alignment 4.9e-17

Best Hits

KEGG orthology group: None (inferred from 80% identity to pfo:Pfl01_3556)

Predicted SEED Role

"alkylhydroperoxidase AhpD domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293Q3A3 at UniProt or InterPro

Protein Sequence (172 amino acids)

>PfGW456L13_3729 alkylhydroperoxidase AhpD domain protein (Pseudomonas fluorescens GW456-L13)
MTRITPISLEHATDATRPLLEGVQKKIGFLPNVFKVLAHAPAVLTSYLQNSAALGKTSLS
ATEKEAVSLATSQVNGCDYCLAAHTLFASKAGLSKQDILSARHGELNAIATLARQITESR
GHLTVEQIAAARAAGIDDGKIIEVIAHVASQTLTNYLNNTVLTDIDFPAIDA