Protein Info for PfGW456L13_3624 in Pseudomonas fluorescens GW456-L13

Annotation: L-lysine permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 39 to 62 (24 residues), see Phobius details amino acids 68 to 86 (19 residues), see Phobius details amino acids 146 to 167 (22 residues), see Phobius details amino acids 186 to 204 (19 residues), see Phobius details PF01810: LysE" amino acids 14 to 200 (187 residues), 114.2 bits, see alignment E=2.8e-37

Best Hits

KEGG orthology group: None (inferred from 67% identity to bpt:Bpet1372)

Predicted SEED Role

"L-lysine permease" in subsystem Lysine degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QSU2 at UniProt or InterPro

Protein Sequence (207 amino acids)

>PfGW456L13_3624 L-lysine permease (Pseudomonas fluorescens GW456-L13)
MNELLLVAAISILAVISPGSDFAMVTRNSYAYGRRSGLMAALGIACGVQIHVFYTVFGAA
VIFTQSPLLFMAMKLLGAGYLIYLGIKSLTSTSSLTFGGANASAPSSWEAFRTGFFTNAL
NPKTMLFVVATYSQVVHTGSSLTANFAYGLFMSFTHWAWFSFVALFFSAEALRRRMLEKQ
QVIDRLIGTALIGLAALLVIPGVGGVL