Protein Info for PfGW456L13_3618 in Pseudomonas fluorescens GW456-L13

Annotation: Beta-lactamase class C and other penicillin binding proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 294 PF00144: Beta-lactamase" amino acids 22 to 257 (236 residues), 126.4 bits, see alignment E=7.4e-41

Best Hits

KEGG orthology group: None (inferred from 86% identity to psb:Psyr_4495)

Predicted SEED Role

"Beta-lactamase class C and other penicillin binding proteins" in subsystem Beta-lactamase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QQI4 at UniProt or InterPro

Protein Sequence (294 amino acids)

>PfGW456L13_3618 Beta-lactamase class C and other penicillin binding proteins (Pseudomonas fluorescens GW456-L13)
MLSSLVSNGQPQTPDRLELTAPWWSFTKTVLAATALSLVRDGLIGLDDPISDQPFTLRQL
LRHEAGLADYGELAEYHAAVTNSEPAWSADEMMQRLDGARLRCNPGTDWHYSNVGYLLIG
RLIERLTDLTLDDAVTQRALTPLGLSNVRFAKTRADLQKTHLGSTSNYDPAWVYHGLLIG
PISQAALFLDRLLCGELLSTGLLQEMQTARTLGGPIPGRPWIIPGYGLGVMQGSIDGGHS
LCGHTGCGPGSVIAVYRIRDGDASACCAVFEAGASEGAVEAIAVKQLMQVMRGG