Protein Info for PfGW456L13_3588 in Pseudomonas fluorescens GW456-L13

Annotation: Exoenzymes regulatory protein AepA in lipid-linked oligosaccharide synthesis cluster

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 579 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF07969: Amidohydro_3" amino acids 71 to 576 (506 residues), 242.3 bits, see alignment E=1.7e-75 PF01979: Amidohydro_1" amino acids 289 to 575 (287 residues), 46.2 bits, see alignment E=3.9e-16

Best Hits

KEGG orthology group: K07047, (no description) (inferred from 82% identity to pfl:PFL_3508)

Predicted SEED Role

"Exoenzymes regulatory protein AepA in lipid-linked oligosaccharide synthesis cluster"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QN09 at UniProt or InterPro

Protein Sequence (579 amino acids)

>PfGW456L13_3588 Exoenzymes regulatory protein AepA in lipid-linked oligosaccharide synthesis cluster (Pseudomonas fluorescens GW456-L13)
MKRILQSALAMAIGLSSMESMAAADLILHNGKVFTAEQGKALQQAVAVEDGKVVKVGSDA
EVLALKDPGTQVIDLQGKVLMPGLIDTHSHAVFGGMKLKSADLETQMLPFDELEQRLREW
RDNGKARHGDILVVGGTPSTYWSQVAEFEKRFNQGEWAGTPILFVGWDYHTGWANKALLK
RAGIDAERVKALTGEAVATIGHHDDNTPNGFVADAGLSAVMSQLPPASLEQLIGAAQAAR
DLYHSLGVTALMDPAANAVPGDALFDFKPTVKNVGVLPAYKALADKGELRMHVAALMVVN
PKSKPADLEVMEQVRQQFADVDNLSLPGIKVFADGVAEFPAQTASLLSPYKNSLKGGELL
IDPAHFGELVGAADARGWLVHVHAIGDRAVRESLNGIEQARREGHNKVVHSITHLQMVNP
KEFTRFKPLNVIASMQLYWASADELSIDLLQPYINAMQFQFMYPARSLLKNGATISGASD
WPVSTPDPWKAIGQAISRKGPKGVLNQAEAIDRETMFNAYTRNAAKTIGLEQQIGTLTPG
KQADMIVVDRDVFSAPETQLADTQVLKTYFAGREVYSRP