Protein Info for PfGW456L13_3434 in Pseudomonas fluorescens GW456-L13

Annotation: Permease of the drug/metabolite transporter (DMT) superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 294 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 32 to 53 (22 residues), see Phobius details amino acids 64 to 84 (21 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 119 to 138 (20 residues), see Phobius details amino acids 151 to 169 (19 residues), see Phobius details amino acids 181 to 204 (24 residues), see Phobius details amino acids 210 to 229 (20 residues), see Phobius details amino acids 241 to 259 (19 residues), see Phobius details amino acids 265 to 283 (19 residues), see Phobius details PF00892: EamA" amino acids 4 to 135 (132 residues), 71 bits, see alignment E=5.8e-24 amino acids 151 to 280 (130 residues), 74.5 bits, see alignment E=4.7e-25

Best Hits

KEGG orthology group: None (inferred from 61% identity to pao:Pat9b_2766)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QML3 at UniProt or InterPro

Protein Sequence (294 amino acids)

>PfGW456L13_3434 Permease of the drug/metabolite transporter (DMT) superfamily (Pseudomonas fluorescens GW456-L13)
MNLLLPVLATLIWAASTVVNRLSVGVIDPAAISFYRWLTALLVLSPVLLPRVWRLRRQIR
PYLAKLWLLGLLGMSLYQSLAYFAAHTVSATSMGLILATMPLLTVLLAFPVLNTRPTTTL
LVGALVSFAGLAWLLAAGDLSSLWQHGVGQGELMMLAASLSYALYCVLVKRWQIPLPTWE
SLYVQIICGTLLLVPPFVLAPSIALTAKNIPLVLFAGLFASALAPGLWMRGLQTLGAEKT
AVLMNLVPLFTAVLAIVLLGETLHLYHAVGGGLILLGIGLAQWKPARVLARAAT