Protein Info for PfGW456L13_3432 in Pseudomonas fluorescens GW456-L13
Annotation: Anaerobic dehydrogenases, typically selenocysteine-containing
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Anaerobic dehydrogenases, typically selenocysteine-containing" in subsystem Anaerobic respiratory reductases
MetaCyc Pathways
- formate oxidation to CO2 (1/1 steps found)
- purine nucleobases degradation II (anaerobic) (16/24 steps found)
- oxalate degradation VI (1/4 steps found)
- oxalate degradation III (1/5 steps found)
- superpathway of C1 compounds oxidation to CO2 (6/12 steps found)
- purine nucleobases degradation I (anaerobic) (6/15 steps found)
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A293QRY6 at UniProt or InterPro
Protein Sequence (553 amino acids)
>PfGW456L13_3432 Anaerobic dehydrogenases, typically selenocysteine-containing (Pseudomonas fluorescens GW456-L13) MKEKTKQGRRVLTQGALTLLMVGSAQGLMAASFDMSNPDYRVRWDNTVRYNLGMRTDSQD SHIMNTPNYDESDGKFDRNEIVTNRLDLFSEFDFSYLNDWGARLSAAGWYDQAYDDDKVH SNIPGFATSYHNNKYSGEVDRYMNGPSGEILDAFLWKNFNVGEIPVNVKAGRHTNYWGEG LLIGAHAVSYSQAPSDGVKASTSPGIETKEVFLPVGQISAKAQLTDHLSVAAQYFYEWEP TRIPYGGTYFGGADPLFEGPDQLPLAANGSTLQRQDSKFGRDGKNWGVMGKLNVEEIEST FGAYYRQFDDYQPWLAPEIKAAAGSYRVIYPRGVKLAGLSFARVFNTVAVGTELSYRMNG ALNATGVSALDDEGPRGDTIHFIANAVYGVPRNFISNNGTLVGEFAYSHLDRVTEHEELY KGVGENACTDARNPRSPGSGDESDGCSSKNYYAVAVNYTPQYIQVLPSWDLDVPMTVNYG LHGNAPTAGGGNEGALSYSVGLKATYAQLYEFGLRYADTKAQPKHLANGTVAGNGPVGGT DRGWLAFTFKTSF