Protein Info for PfGW456L13_3415 in Pseudomonas fluorescens GW456-L13

Annotation: Major facilitator superfamily MFS_1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 420 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 146 to 167 (22 residues), see Phobius details amino acids 178 to 199 (22 residues), see Phobius details amino acids 231 to 252 (22 residues), see Phobius details amino acids 262 to 284 (23 residues), see Phobius details amino acids 291 to 312 (22 residues), see Phobius details amino acids 318 to 344 (27 residues), see Phobius details amino acids 356 to 378 (23 residues), see Phobius details amino acids 385 to 405 (21 residues), see Phobius details PF07690: MFS_1" amino acids 30 to 371 (342 residues), 133.7 bits, see alignment E=4e-43 amino acids 242 to 409 (168 residues), 54.9 bits, see alignment E=3.6e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QSH6 at UniProt or InterPro

Protein Sequence (420 amino acids)

>PfGW456L13_3415 Major facilitator superfamily MFS_1 (Pseudomonas fluorescens GW456-L13)
MHPSKNEAAIDLHEFRQSWKILMLAVAGVAISINAALLYGFGTLVVPLGDAFGWSKSELQ
ACITFLFGGAVVSLQLVGWFNLRYGMKRVTVISLLLLSLGYLATTQLTQSIWSMYIAFAL
LPIVGMGALAVTWTQLISLWFDKNRGLALAIGLSGTGVTAATIPRLMAWGIEQWDWRAAF
VILALLNLLVLLPLILLWFKLPAAVGNRNDGSALEQLPGMGFREGMGSLKFWTCNLALGL
VISSIVGMVTSTVPMLQARGLSAAQAATIFSGFGISLIFGRMLIGYLLDRLWPPAVSALS
LVLPAIGCFIYLSPTNEFAPLLLAAVLVGFGAGAEFDIAAFLIARYFGLREYGRLFGVHQ
GLNTVASALAPLLFAYMLARTGSYTSMLVYSAACCLIGPLLLLTLGRVPRFNAQTIPSQS