Protein Info for PfGW456L13_3410 in Pseudomonas fluorescens GW456-L13

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 528 transmembrane" amino acids 18 to 40 (23 residues), see Phobius details amino acids 47 to 70 (24 residues), see Phobius details amino acids 79 to 101 (23 residues), see Phobius details amino acids 107 to 134 (28 residues), see Phobius details amino acids 145 to 168 (24 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 221 to 244 (24 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 289 to 307 (19 residues), see Phobius details amino acids 315 to 338 (24 residues), see Phobius details amino acids 347 to 369 (23 residues), see Phobius details amino acids 375 to 393 (19 residues), see Phobius details PF05977: MFS_3" amino acids 5 to 516 (512 residues), 472.5 bits, see alignment E=1.6e-145 PF07690: MFS_1" amino acids 18 to 362 (345 residues), 111.1 bits, see alignment E=5.9e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QSM4 at UniProt or InterPro

Protein Sequence (528 amino acids)

>PfGW456L13_3410 MFS permease (Pseudomonas fluorescens GW456-L13)
MSEGSAWAPFRNRAFRGLWLAGAVVNMAIWMQTVAAAWIMTTLTTSAAMVSLVQTAVTLP
VFLFAFPGGVIADRVDRRGWLIITQCMMLFAALVLCGLAYSAHLETWGLLAFTFVLGTGS
ALGMSAWMVTMVGVLSRDQVPAAVSLNGISINATRALGPALAGALIAYWNTTSVFLAIAL
CMFSVLLFLFRLVPNPPAVGLPPETLTGGMRSGLRYIRHSAVLFSAMKQVLVFTSSASAL
WALMPLVAKQELGMDAGGYGLLMAFLGAGAVLAALNLPRLYRVLNMRHLLVCGVIAFALA
TLTAALSHNRYGVCAMMLLAGFGWMAVNATISTVVQTYAANWVRARVASVYVLILMGSMA
AGGAIWGALAEYLGLSQSLLLSTLLLLVGILLTRNGRVELGQEADFAEVQLTDKLQLASP
VTHADGPVSVEIVYQVTAPDCDDFLAAVYAVGKARRRNGAQNWRLYRDMANPQLYSERFI
VESWLEYLRQQTRVTQADHAQERLIERFRREDLQTRRLIHQPLVRQSD