Protein Info for PfGW456L13_3322 in Pseudomonas fluorescens GW456-L13

Annotation: FIG005548: transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 794 transmembrane" amino acids 23 to 43 (21 residues), see Phobius details amino acids 238 to 260 (23 residues), see Phobius details amino acids 267 to 289 (23 residues), see Phobius details amino acids 295 to 312 (18 residues), see Phobius details amino acids 339 to 362 (24 residues), see Phobius details amino acids 370 to 396 (27 residues), see Phobius details amino acids 417 to 444 (28 residues), see Phobius details amino acids 626 to 644 (19 residues), see Phobius details amino acids 651 to 673 (23 residues), see Phobius details amino acids 679 to 698 (20 residues), see Phobius details amino acids 725 to 745 (21 residues), see Phobius details amino acids 753 to 777 (25 residues), see Phobius details PF03176: MMPL" amino acids 479 to 776 (298 residues), 102.8 bits, see alignment E=9.3e-34

Best Hits

KEGG orthology group: K07003, (no description) (inferred from 97% identity to pfo:Pfl01_3229)

Predicted SEED Role

"FIG005548: transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293Q257 at UniProt or InterPro

Protein Sequence (794 amino acids)

>PfGW456L13_3322 FIG005548: transport protein (Pseudomonas fluorescens GW456-L13)
MTSLSTHHQDKATFLERLIFNNRPAVITICLLVSIFLFWQATLIRPSTSFEKMIPLEHPF
IQKMMEHRNDLANLGNTVRISVEATDGDIFSKEYMETLRQINDEVFYISGVDRSGLKSLW
SPSVRWTEVTEEGFAGGEVIPQSYNGSQASLDLLRNNVLKSGQVGRLVSNDFKSSIVDIP
LLESYPDPQDQGKLLALDYRQFSHELEDKIRTKFEAQNPNVKIHIVGFAKKVGDLIDGLV
MVVMFFGVAFVITLILLLWFTNCLRSTVAVLSTTLVAVVWQLGLMHFFGFGLDPYSMLVP
FLIFAIGISHGVQKINGIALQSSEADNALTAARRTFRQLFLPGMIAILADAVGFITLLII
DIGVIRELAIGASIGVAVIVFTNLILLPVAISYVGISKRAVDRSKKDATREHPFWRLLSN
FASAKVAPVSILLALVAFGGGLWYSQNLKIGDLDQGAPELRPDSRYNKDNNFIINNYSTS
SDVLVVMVKTKSEGCSRYEAMAPIDELMWKMQNTEGVQSAISLVTVSKQMIKGMNEGNLK
WETLSRNPDVLNNSIARADGLYNNSCSVAPVLVFLNDHKAETLDRAVHAVQEFAKENNKE
GLEFILAAGNAGIEAATNEVIKKSELTILVLVYICVAVMCMITFRSWAATLCIVLPLVLT
SVLGNALMAFMGIGVKVATLPVVALGVGIGVDYGIYIYSRLESFLRAGLPLQEAYYQTLK
STGKAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALARFLIKP
EKLAGQKGNSLFAH