Protein Info for PfGW456L13_3308 in Pseudomonas fluorescens GW456-L13

Annotation: Exonuclease SbcC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1213 transmembrane" amino acids 1126 to 1143 (18 residues), see Phobius details PF13476: AAA_23" amino acids 6 to 256 (251 residues), 76.7 bits, see alignment E=7.8e-25 PF13555: AAA_29" amino acids 27 to 62 (36 residues), 28.8 bits, see alignment (E = 1.6e-10) PF13558: SbcC_Walker_B" amino acids 1115 to 1172 (58 residues), 36.4 bits, see alignment 1e-12

Best Hits

KEGG orthology group: K03546, exonuclease SbcC (inferred from 85% identity to pfo:Pfl01_3217)

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QRZ4 at UniProt or InterPro

Protein Sequence (1213 amino acids)

>PfGW456L13_3308 Exonuclease SbcC (Pseudomonas fluorescens GW456-L13)
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR
LNNTGRDAKVPDADGEIATGDPRTLLRRGTGEGYAEVDFVGVDGRRYRARWEANRARDKA
AGKLQASRQSLRDIDQDQLLASQKGEYKTQLEAALGLNFEQFTRAVMLAQSEFSAFLKAD
DNDRSELLEKLTDTALYTRLGRRAFDKTKEAREAHKLLQDQASGVTPLSPEARVELDERF
SQAQQQLKTQQAQLKQLELQDTWLKDLRRLQDEHLAASEQLQSAQTHWEALASERLRLTR
LEQLAPQRHQFARKAEVDALLTPLAAQIALQTQQHGELGERQTLLEQQLGSARIALSETQ
QRQADSAPLLRQAFEAQSTLARLAKDTALSAEARQQAQQACTQGQGTIQTLLDQQARGAG
DLQRIATGLEQSTHLAPLSDAWNAYRDRLQQLMLIGNRLNQGQAELASLEQNAASTDQAL
TAQKQQLEVLFKEAGAEPDAVAEQIGILGSLLQDNRKQLRAVEDLARLWASQQDLDKRSA
ELQQRQLTAQQERERLTQDGVKAKADLSVAEQTLNVTRELLERQRLARSASVEELRAQLQ
DDQPCPVCGSNEHPYHQPEALLQSLGRFDESEQANAQKAVDLLKEKLTDLRAEVGGLIAQ
QKELLQQQEQLATQQQALAPSLEAHPLAAQLLNQDAAKRDAWLVQQNSQLNQSISQDEQR
QSALLTLQQDAARLTQQLRHAETAHQQAAQHLSNQQRELNNDRQRLDEELKAFANLLPAE
TLQALRVEPAATFMQLDRQIAERLAQLEQQKEELAEQQQRQQHLEKEQDRQQSRVQQLQA
AEQQFTGLAEQQQASQHTLGQLLGEHSSAEHWQQQLEQTVEQARSAEASTAQTLQSVVTQ
SVQIAAELKAQRERLHALEGEELELAGKIGDWRARHPELDDGGLENLLSVDDTQVSELRQ
RLQHSEKAIEQANVLVQERNKHLLNHQAQQNGNLDAEQLASALIDLQNLAAASEQHCAEL
RAEQAEDQRRQNANQALAQQIADAYNEYQRWARLNALIGSATGDTFRKIAQAYNLDLLVH
HANVQLRQLVRRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV
QRQGNGLSTLEVK