Protein Info for PfGW456L13_3276 in Pseudomonas fluorescens GW456-L13

Annotation: BatA (Bacteroides aerotolerance operon)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 330 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 296 to 318 (23 residues), see Phobius details PF00092: VWA" amino acids 93 to 274 (182 residues), 69.9 bits, see alignment E=3.2e-23 PF13519: VWA_2" amino acids 94 to 207 (114 residues), 50.5 bits, see alignment E=3e-17

Best Hits

KEGG orthology group: K07114, uncharacterized protein (inferred from 79% identity to pfl:PFL_2846)

Predicted SEED Role

"BatA (Bacteroides aerotolerance operon)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293Q219 at UniProt or InterPro

Protein Sequence (330 amino acids)

>PfGW456L13_3276 BatA (Bacteroides aerotolerance operon) (Pseudomonas fluorescens GW456-L13)
MWQLDYPWLLILLPLPWFGYRYLSDYREARSAVRVPFFGAMSRAVGQAPSQAGTRSNGWQ
LLLNLLVWALLLVAASRPVLVEKPIERQQPVRDLMLAIDISQSMETTDFTDANGQKINRL
AAVKEVVHGFIDKRKDDRIGLIVFGTGAYPQAPLTLDHASLSLLLDDTGIGMAGPNTAIG
DAIGLSLKLLTQAHEQEKVLILLTDGNDTSSAITPDHAAAMAAAKGVVIHTIGIGDPTAE
GEARVNLQGLQDIAQATGGRFFRAEDRNALDQVYSTLDKLTPHQVKTLSHQPKRDLFWWP
LGAAIALLALYHLGALLLPRLMLARQRQEA