Protein Info for PfGW456L13_3245 in Pseudomonas fluorescens GW456-L13

Annotation: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 527 PF08323: Glyco_transf_5" amino acids 50 to 284 (235 residues), 242.5 bits, see alignment E=1.3e-75 TIGR02095: glycogen/starch synthase, ADP-glucose type" amino acids 50 to 516 (467 residues), 480.7 bits, see alignment E=2.3e-148 PF13439: Glyco_transf_4" amino acids 162 to 271 (110 residues), 30.5 bits, see alignment E=9.1e-11 PF00534: Glycos_transf_1" amino acids 338 to 479 (142 residues), 59.7 bits, see alignment E=6.6e-20 PF13692: Glyco_trans_1_4" amino acids 342 to 478 (137 residues), 42.6 bits, see alignment E=1.9e-14

Best Hits

Swiss-Prot: 95% identical to GLGA_PSEPF: Glycogen synthase (glgA) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K00703, starch synthase [EC: 2.4.1.21] (inferred from 92% identity to pfo:Pfl01_2549)

Predicted SEED Role

"Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)" in subsystem Glycogen metabolism (EC 2.4.1.21)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.1.21

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QS71 at UniProt or InterPro

Protein Sequence (527 amino acids)

>PfGW456L13_3245 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) (Pseudomonas fluorescens GW456-L13)
MISTALEIQGERAHQVGESSAVTVANTQPVGVPGTRTLTPAANQNPNRKKVLFVTSEIAD
LVKTGGLGDVSAALPRAMAHLHDVRVLIPGYPQVLNSENPIHIIGELGGHAALPPCKIGR
MDMPDGLVIYVLICPELYEREGSPYGANNGRDWPDNHIRFARLGLAAADIAANLAQIHWC
PDLVHAHDWPAGLAPAYMHWRGQRTPTLFTIHNLAYQGVTSLGSCPELGIPHHALQQEGM
EFYGKMSFLKAGMAYSSHITTVSATYAQEITTPDFGCGLDGFLAAKTQQGLLSGIPNGID
ESWDAATDPHLFCPFSIGDWDGKAVNAAHVRELFGLQDSEGPLFAVVSRLVYQKGLDLTE
AVSEYIVKSGGQIAIIGRGEPEEEQSMRQLALRFPGQIGVRIGFNETDARRMFAGSDFLL
MPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIENGVTGFLFDESTVQSYQEALSRAFK
VFAFPDLLHAMRCRAMAAPFNWCKAVEPYAELYEQLVAKALGKSHKQ