Protein Info for PfGW456L13_3204 in Pseudomonas fluorescens GW456-L13

Annotation: ABC transporter, substrate binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 533 signal peptide" amino acids 22 to 24 (3 residues), see Phobius details amino acids 45 to 46 (2 residues), see Phobius details transmembrane" amino acids 25 to 44 (20 residues), see Phobius details TIGR01409: Tat (twin-arginine translocation) pathway signal sequence" amino acids 19 to 46 (28 residues), 23.4 bits, see alignment (E = 2.8e-09) PF00496: SBP_bac_5" amino acids 101 to 428 (328 residues), 232.3 bits, see alignment E=1e-72

Best Hits

KEGG orthology group: K02035, peptide/nickel transport system substrate-binding protein (inferred from 89% identity to pfl:PFL_5627)

Predicted SEED Role

"ABC transporter, substrate binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QRD0 at UniProt or InterPro

Protein Sequence (533 amino acids)

>PfGW456L13_3204 ABC transporter, substrate binding protein (Pseudomonas fluorescens GW456-L13)
MSDNKNKITQANHEFSFPRRDFLKYSAAAAAVAGAFSMGLPFGAFAGEATPKPGGVLRLG
LAGGSTTDSRDPGSWSDTFTFVGFSAVYNTLTEIAVDGTAIPELAQSWTSTPDARIWTFK
IRQGVTFHNGKTLTADDVVASIQHHLGEKSTSAAKTVLGDVAKVSANGSDSVVFELHSGN
ADFSYVVADYHLAIMPSKDGAADWQAGAGTGGYRLKDFEPGVRMTLERSPDYWKPGRAHF
ASAELIAIADGAARVNALVTGQVDVINKVDLKTVALLKRNPNLVIEETKGAQHYTFPMLT
DSQVFQNNDVRLAMKHAINRETLLASVLHGYGLVGNDHPIQPGSRFINTALEQRTYDPDK
SRFYLKKAGLDSLKVRLQASDAAYTGAVDASVLFKEQARAAGIDIDVVREPADGFFSNVW
MKQPFTTSFWYSSLTADRMFSIGYAKGAAWNETHWDNPRFNQLLNAARGEMNDPLRREMY
NEMQALCRDEGGAIVPLFASSVAARSNKVAHGAQTAPYGELDGLRVIERWWQA