Protein Info for PfGW456L13_3198 in Pseudomonas fluorescens GW456-L13

Annotation: FIG00963008: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 530 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 131 to 154 (24 residues), see Phobius details amino acids 197 to 218 (22 residues), see Phobius details amino acids 238 to 263 (26 residues), see Phobius details amino acids 294 to 311 (18 residues), see Phobius details amino acids 323 to 348 (26 residues), see Phobius details PF00924: MS_channel_2nd" amino acids 338 to 403 (66 residues), 57.6 bits, see alignment E=1.1e-19 PF21082: MS_channel_3rd" amino acids 412 to 497 (86 residues), 32.3 bits, see alignment E=1.1e-11

Best Hits

KEGG orthology group: None (inferred from 69% identity to ppu:PP_2741)

Predicted SEED Role

"FIG00963008: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QRW4 at UniProt or InterPro

Protein Sequence (530 amino acids)

>PfGW456L13_3198 FIG00963008: hypothetical protein (Pseudomonas fluorescens GW456-L13)
MFTVFGMFWSVQLWAEDAPKVVDAPVELKVANRSIMVFRATILGEAPASRVKRAKAVIGE
ALDDADDLNVTLDPIMKSYMVLLGSRRAFIVSPKDFDETEFDSVQLAAEAAADRLRQVVA
ETREARSLQLILRSVVAALLATGIYIALLFGMSYLRRRVLQKLPELMHRHTQALKVGKVP
LIDANFLYPLVSRVLELLRWVIVLLLSYEWLGFVLSRFPYTRPWGESLNNYLLEVADYLL
QGILGAIPGLGVALAIFFIARGATAFSRRILRRMATPGTFNWLNHETLKPTQRLTSLAIW
LFALAMAYPYLPGAGTDAFKGLSVLVGLMISLGASSVVGQAAAGLILTYTRTLRPGEFVR
IGEHEGTVTELGMFTTSIRTGLGEVLTLPNSMITGTVTKNYSRVVQGPGYVVDTVVTIGY
DTPWRQVEGMLLEAARRTPGVLETPPPQVFQTALSDFYPEYRLVAQAIPSQPRPRAVLLS
MLHANIQDVFNEYGVQIMSPHYLGDPPQEKWVPRDKWYMAPAQESQETLK