Protein Info for PfGW456L13_3168 in Pseudomonas fluorescens GW456-L13

Annotation: Sensory histidine kinase QseC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 23 to 26 (4 residues), see Phobius details amino acids 166 to 188 (23 residues), see Phobius details PF08521: 2CSK_N" amino acids 19 to 161 (143 residues), 27.2 bits, see alignment E=9.3e-10 PF00512: HisKA" amino acids 239 to 301 (63 residues), 52.4 bits, see alignment E=1.1e-17 PF13581: HATPase_c_2" amino acids 347 to 435 (89 residues), 32.2 bits, see alignment E=2.4e-11 PF02518: HATPase_c" amino acids 350 to 453 (104 residues), 84.9 bits, see alignment E=1.3e-27

Best Hits

KEGG orthology group: None (inferred from 78% identity to pfo:Pfl01_3355)

Predicted SEED Role

"Sensory histidine kinase QseC" in subsystem Orphan regulatory proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QPC3 at UniProt or InterPro

Protein Sequence (455 amino acids)

>PfGW456L13_3168 Sensory histidine kinase QseC (Pseudomonas fluorescens GW456-L13)
MSSIRRRTLVLIIGLMLAGLAVISVLNLHDSNHEIAEVYDAHLAQNARLLQGVMRMPMVS
KEHADLYKAFNQALNEATPGGEGHPYETKIAFQVWNARNEVLVHTASSPSFSTPAVTPGF
SDVVDLNNRHWRAFLLVDKQNNLRIWVGERDDVRMDLVDRIVRHTLWPNILGSLLLAAMI
WLAIGWGLKPLVNMAATLRARHPGSLEPLQLTPLPTELEPMQAALNRMLAQIQDVMGRER
RFIADAAHEMRTPLAVLRIHAENLMAAGSEADRRASLEFLIAGVDRTSRLVNQLLTMARI
EPTAGTKAPVPIDLASTVRESLVQLTPWLLSKGLELVFDVRDDISLARVDPAAIDIALNN
LVTNAANFSPRHGVITVRLVEKENSYELTVEDEGPGINEQDRERLFERFYSSGNHQGAGL
GLTIVKAIADRFGGQIKLENRSPGGLRATLEIRRS