Protein Info for PfGW456L13_3165 in Pseudomonas fluorescens GW456-L13

Annotation: Transporter, MFS superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 421 transmembrane" amino acids 9 to 27 (19 residues), see Phobius details amino acids 47 to 68 (22 residues), see Phobius details amino acids 77 to 95 (19 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details amino acids 144 to 162 (19 residues), see Phobius details amino acids 172 to 191 (20 residues), see Phobius details amino acids 217 to 239 (23 residues), see Phobius details amino acids 248 to 267 (20 residues), see Phobius details amino acids 286 to 304 (19 residues), see Phobius details amino acids 310 to 332 (23 residues), see Phobius details amino acids 347 to 371 (25 residues), see Phobius details amino acids 383 to 403 (21 residues), see Phobius details PF07690: MFS_1" amino acids 35 to 363 (329 residues), 74.5 bits, see alignment E=4e-25

Best Hits

KEGG orthology group: None (inferred from 49% identity to ctc:CTC01173)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QRM5 at UniProt or InterPro

Protein Sequence (421 amino acids)

>PfGW456L13_3165 Transporter, MFS superfamily (Pseudomonas fluorescens GW456-L13)
MTSQDKAKWLRFLILILGGGTIYKLANLKDAFYIPMQEFMGLSHTEIGVLLSANAIIATA
LFVVGGMLADRYDTRKLIPLGLIGTGGLGLYLATFPPFSNLLVVFCLLAVCADCLFWPSL
LKAIRNLGDDKEQGRLFGLLEGGRGVIDTLVAFSALGVFVAMGSGENGLKSAILFYSVID
ILAGTLTWLLLKSGKTQSTVKPKNGLSNLFEAIKVPGIWLVSLNVFMVYIVYCGLTYFIP
YLKEMYELPVALVGAYGIINQYFLKILGGPAGGFIADKQFKSSSRYLKWAFLALLPLMGV
IMLIPKSPDFIYAGMAATLSFALIVFSMRGVFWAPMGEVGIPQHITGSAFGIGCLIGYAP
GMFAYVIYGAILDHFPGQQGYNYVFSLMSVLAIVGFMVSSLLYQAVRKNATITGKVSAAQ
A