Protein Info for PfGW456L13_3161 in Pseudomonas fluorescens GW456-L13

Annotation: probable membrane protein YPO1564

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details PF04134: DCC1-like" amino acids 21 to 130 (110 residues), 107.3 bits, see alignment E=5.7e-35

Best Hits

Swiss-Prot: 41% identical to YUXK_BACSU: Uncharacterized protein YuxK (yuxK) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 81% identity to pfs:PFLU3384)

Predicted SEED Role

"probable membrane protein YPO1564"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QPR4 at UniProt or InterPro

Protein Sequence (150 amino acids)

>PfGW456L13_3161 probable membrane protein YPO1564 (Pseudomonas fluorescens GW456-L13)
MPVSQTRPSPAPLLKPGETVVLFDGVCKLCNGWVRFLIRHDRQRRVRLAAVQSPEGQALL
AWAGLPLDQFHTMAVIRDRHYWERSQAYFEVIAQLPARWHPVLLLRIFPRTLLDWAYDRI
ALNRYRLFGKYDTCLLPDPDHEQRFLKAPL