Protein Info for PfGW456L13_2932 in Pseudomonas fluorescens GW456-L13

Annotation: Rtn protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 234 to 253 (20 residues), see Phobius details PF12792: CSS-motif" amino acids 41 to 230 (190 residues), 138.6 bits, see alignment E=2e-44 PF00563: EAL" amino acids 262 to 497 (236 residues), 211.7 bits, see alignment E=1.1e-66

Best Hits

KEGG orthology group: None (inferred from 76% identity to pfo:Pfl01_2920)

Predicted SEED Role

"Rtn protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QR74 at UniProt or InterPro

Protein Sequence (510 amino acids)

>PfGW456L13_2932 Rtn protein (Pseudomonas fluorescens GW456-L13)
MPLKAKTRSRSTRIAVTLISGLLPVLLGAAILYMQAGRALKQDAEQTAEESIRQFDLMLD
NNAQAARELLPLAGQSCGEVTLALREQVTRRPFVRSTNLVWDNNLYCSSLFGDYQEKVNP
GDYTQGALWLLSGNPVTPNTAVLVYRLSEGNKGALSTLDGYHLINTLRLIGRNTLLVLQV
GPDWISADGKVHTGTAPDLPVAQSRLTSGRYAFAVEAGFPKGEIWRYIRSEYPPLLSLLI
FFGVIAGAIGHVLQKRSSAPTQEMQRALEASEFIPYFQPVVHGDSKSWSGAEVLMRWQHP
KEGLVRPDLFIPFAEHSGLIVPMTRSLMRQTAALLAPQSASFNKPFHIGINITASHCQDL
ELVKDCREFLDAFEPGSIHLVLELTERELIEPTAITLQLFEQLRELGVKIAIDDFGTGHS
SLGYLRQFNVDFLKIDQSFVAMIGVDTLSSHILDSIIELAVKLDLALVAEGVETREQSDY
LSVHQVNFLQGYLFGKPMPGAEFISALSDH