Protein Info for PfGW456L13_2876 in Pseudomonas fluorescens GW456-L13

Annotation: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 525 PF00005: ABC_tran" amino acids 21 to 179 (159 residues), 109.8 bits, see alignment E=9e-35 amino acids 295 to 445 (151 residues), 117.6 bits, see alignment E=3.5e-37 PF08352: oligo_HPY" amino acids 230 to 262 (33 residues), 21.1 bits, see alignment (E = 1.6e-07) amino acids 496 to 520 (25 residues), 19.3 bits, see alignment (E = 5.8e-07)

Best Hits

KEGG orthology group: K13896, microcin C transport system ATP-binding protein (inferred from 91% identity to pfo:Pfl01_3076)

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QR26 at UniProt or InterPro

Protein Sequence (525 amino acids)

>PfGW456L13_2876 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) (Pseudomonas fluorescens GW456-L13)
MTNLIEIRDLSVAFSGQTVVRNLCLDIRPGECLALVGESGSGKSVTAHSILQLLPQTDTE
TTGSIRYRGQELVGADAGKLRKLRGNRIAMIFQEPMTSLNPLHSIEKQIGETLLVHKGLA
GKAAQARILELLHLVGIQKPEERLKAYPHQLSGGQRQRVMIAMALACEPELLIADEPTTA
LDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAPCETLFT
EPRHPYSCILLHAEPEGEALPRDERENVLEVDNLQVRFPVGGGLFQRKTWLRAVDGISLN
IQRGKTLGIVGESGSGKSTLGQAILRLLDSEGGIRFQGQALDGLTQKQLRPWRKKMQVVF
QDPFGSLSPRMSVAQIISEGLEVHSQLSTEECNAEVIRALNEVGLDPQSRHRYPHEFSGG
QRQRIAIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQEKYGLTYLFISHDLAVV
RALAHDMIVIKDGKVVERGASHEVFDSPQHPYTKELLAAAMLGQA