Protein Info for PfGW456L13_2846 in Pseudomonas fluorescens GW456-L13

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2160 transmembrane" amino acids 444 to 467 (24 residues), see Phobius details PF20178: DUF6543" amino acids 53 to 299 (247 residues), 144.7 bits, see alignment E=1e-45 PF13855: LRR_8" amino acids 1762 to 1806 (45 residues), 30.7 bits, see alignment (E = 5.2e-11) PF14496: NEL" amino acids 1888 to 2106 (219 residues), 166.6 bits, see alignment E=1.5e-52

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QQR6 at UniProt or InterPro

Protein Sequence (2160 amino acids)

>PfGW456L13_2846 hypothetical protein (Pseudomonas fluorescens GW456-L13)
LVDATPQRRAAIKASGSLAPNWYTRASREQQQALKDRFNDSLVCQTLLDKTMSSLPDAES
FAEPILQKALKDQFGVEADVNKTLVCLRRALEVSDLEIEISTFEVMKLSLLQAALHNFEA
SECEAGAFHRGSGFVVETSTPGTFEVTALNMSVTQFLSLCRKLDIGAQYQTRVEAFFQAT
AAQKKSTVSEQFIASQKAAMRAAAELALLKKDIEPDDYAMILSVVNGEVHPRVGSRPVWF
RDLNLMKRRMTGCVVFSISEQYRYTNDYIVYIPHDPEHPLKRYTSEQLREELKRQFTAQD
ALPASGSGPTAHQRFFSQFVAYADRPYYFSQFTRKAADSPTDPLHSFWLKVLQYVPPLSS
VARIKELPPEPAGKREPVEDPYLNPFGMIREGVAGIWSANSDLWTYLYEQNRKKVIADAR
SHAVPTADVDARVRAQKLNHLLELGMLGLNMVSMFVPILGEIMLTVMAGQLLYESFEGAI
EWSEGDRTAAKAHLVDVAENLALAAVMAGAGKGLAKLTAVKPEPLVERLQSIKRDDGKTR
LWKPDLSGYERNLILPRHSVPDASGLHRINGKTFIRQGGKVYETTFDPSLKKWRIRHPTD
TSAWQPILEHNGHGAWRHVLERPRTWDRLTLLRRIGHITEAFSDEQLLDIAEACGVEDNA
LRKMHMDHLAPPPELSHALRLFEADPSIGGPLLEKLQRASPGLSNAAARRVLLDANAEEL
TRLKTTSRVPLKMLEEARWYAQQGRQARAFTGLRMEPALSADSRWLALHALEKMPGWSGE
VRLEIRDGHIEGPLIDGIGSEAATDRKYVVKNGPSYQAFDERGETLNGVPATGDNFYASI
MHALPDESRRALGVPHVGQSVDLKQAVIDSAFEHRAQLSQMLEQRSGNGKAFKPPVRVTE
RRVGYYASGRGQGLNPSLVSRVQDVYPALTDQQANGFILAQLRTGKTDAQIYSLLQERMR
EWETLEATLDQWVGEPIAGSVLESMLGGKASVAQSLKQSWRNSPLAGEHPRYRLLELVCD
DPIPALSADFSHVGDLYVRGRSITDANVDALLANFPKLKRLRINATGNDFSTVPQVLSSM
PDLRGLSLYSAAPFAADMPSRLGALTALEELSVYSTWGVPVPLDVSRLRNLRLLDVIAPS
MDQWPTGVLELPRLERLNLTGTAISTFPEGIFEGHEKLWSGLSLDWSNMPRPNFKQAYEY
LRRQPRHLVDLEEMVRDYCKGELKRLAEGINDPSAGLFNQFVEQWQDAGARFDAVEALSE
QHHQLNRHLEDWSQRALRMPAAANEIIGRTWTADALRICWRNGAFKRYGSTADASVLDLP
SLALSEFPELPDGAFPEVRTLYLKGNSAPVEQTRKFVRGFPGLERLDVSGSGLTEVPFAP
GDLEKLTDLDLSNNRIVGDAGVQQAFDGLQALQYLDLSNNPLNTLDVSAMTRLKSLNLRG
TALQEWPTGAQELPELYWLDLRDSKVNALPEPLADETLLKANLTGTPLTPQAVAMRNAAR
HRMEMAKGLPAGALERFDLEQVPQDFPPFESASSIARQLLPLSEVPAGEGVAVLTKRLQR
LKPTLADDDALQMIEQMQGSEAASVKIGEWEKTYETLTRQLNGWLFTRGSRGNGWMTSSS
IRRQAALRIVECWQKGLSSTGAVADAVLDLNGLQLGDLPEVPASFEHVGTLKLTSVKLTR
QGSDGFLKAFTRLKTLDLNGNGLDGVPEPVCDMDRLERLELSSNRMDDAELLYTALSNLE
RLRWLDLSYNELDTFDIGVFEQLETLDLRNNNLTEWPDGVFDSQHLGTLNLSGNDITSIP
EQALSGDHDVLTAGTDLSDNFNLSLESLERLRDYREAGFHDRVLGISRADLDELIDDANG
DGDDSSEGIDTDEELPETEPDTEQKTPWLTHLPPEEVASKTGMWNQLAAEPDNAAFFHLL
SRLQDTQEFRVANADLTRRVWTVIEAAASNTELREILFASSSTHGTCVDGRILTFSGLES
RVFTHNALLDIPVGRPSVKGHALLNLSRQLFRLDKVDDLARKIAAQTGQDEAEIRLGYRI
GLTQGWADGLELPGQPKHMTYASGVTAQQLADARIEIVNAEQSHGFFEDLIQRDYWESYL
KEKHPDVFKALDEMDVQEEVESADDAALLTQLFEQRAARNAKMIELSRQEVAELTAASSR