Protein Info for PfGW456L13_2841 in Pseudomonas fluorescens GW456-L13

Annotation: Leucine-rich repeat domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1295 PF20178: DUF6543" amino acids 35 to 322 (288 residues), 158.1 bits, see alignment E=8.1e-50 PF14496: NEL" amino acids 1180 to 1247 (68 residues), 30.9 bits, see alignment 4.8e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QQF1 at UniProt or InterPro

Protein Sequence (1295 amino acids)

>PfGW456L13_2841 Leucine-rich repeat domain protein (Pseudomonas fluorescens GW456-L13)
MNDHQTPLHPDLAPLRETLKSVVGAALPQSPEQFGAQLIKAKWGQDIDPQKALLVTLDYR
YRGHPPQDGIEQGQVANTQTLVQALLANYQTVGDGRFAESAFGLYTPPDVGPSVRIVEHV
DEFADHGNGNHHTYEGIYRQTTPQVYGPATQIALRPAAFKQWVWELDLQTRYQAYLDRTW
PSDKRIVQAAPYDLRTSAKAAFIMSACLQHQEGSLSQEGLVLAMQAAGLPAQQTWNALTI
GQVQAPTRISAPIEVGRLTIYRYTSDDIWCYRHRHSGRVLLNIPGNSSPLHEFADFRHLR
QWIVDQGRVAATRQALVAHFAEDDREDGTFHAGVSTALEGMAVYPKEHWLKKNAGLFNND
GFWDPQDYIDLERAPTDTDPFAQLVLTMKQASMASVKTIRDDAQVNRDNLSAVVEPLVQW
INRLGPLALFIPGGEGVLVLAGLIDAGYGLDQAVNGKTPEQRSEGVTRTVFGLLNALPLA
GAVAALKGEEKIAGTLHEPRESGSEPHPETPAEPAPGSAPAPVSTRVELMRGVCTPLAAF
SDEVLAQIARVSTVDDDMLRLMHAGRPPTPLLADTITRFKLDQELEIVADPQARAGLFNA
RYQALQHSDKEWVRLFQREYQGLPKSAVEQILDRSGVDINRPVDADEALLLFKRLDSKSR
EYQQHARLNRAYEGLYLRSIVHPETDVLALHSLPRLPGWPKDLRIEVHDGSISGRVLDRC
GPPDSADCRRLIKTGDRYRYSTMAATDGEGSDLFTALVDLLSGEERAAMSLRSPDAASQL
RLRIGTHALPRSELILGLNRMDSRLSFEATGLRGGGFPNTPQAAALTHEIMRLQVKNLYP
DFTDAQADELLLMAGNGAQALVDRLILEMQQLHADLRQWIDQAVLDVDDMDVDFLAVDDD
DAAGMSPEQVAAHNVELLQTVIGYERETRIELGDELMGIWQKCPPQINRVMSGETFSGYR
LDLGFEDYHRLPTMNVRFNEVVELSMRGLHLVERESLSVFLESFPNLRSLNLERVDLRRL
NADGVLEGVLPPPIRQMTHLTTLNLSSTFLQLQERTASQFRELVSLQMLDLSDNPLTVPP
VVLGMNELRVLNLRNTGISHCPIGIADQPYFTSLDLRGNRIGRVPYSILSQAVSRDRVKL
WGNPLTDEDTLLRLVSHRERTGINLWLSEPGADYGSATPWLEEGDESVREARQQIWQRLA
VKPSGSALLRVMDGLSLTADFRVGYWSLQARVWRLLHEADASEELWGWLLHCVETRTADA
DNPFRLFVVLEDRVRLYCDWVAMGRPIPLVDNPVF