Protein Info for PfGW456L13_2824 in Pseudomonas fluorescens GW456-L13

Annotation: BOX elements

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 PF01979: Amidohydro_1" amino acids 101 to 427 (327 residues), 97.3 bits, see alignment E=1.1e-31 PF07969: Amidohydro_3" amino acids 102 to 429 (328 residues), 40.2 bits, see alignment E=3.2e-14

Best Hits

KEGG orthology group: None (inferred from 89% identity to pfo:Pfl01_3147)

Predicted SEED Role

"BOX elements"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QQP0 at UniProt or InterPro

Protein Sequence (495 amino acids)

>PfGW456L13_2824 BOX elements (Pseudomonas fluorescens GW456-L13)
VKRIGLRASCVVGFDGTRHVLWRDGEVVFEGARIEFVGRGYAGPVDQWVDYGNALIGPGF
IDLDALGDLDSTVLTLDNGDERDMGRMWSAQYLARGSRESYSPEEEVFKYRYAFTQLIRN
GITTAMPITSMYYREWAETYDEFAAVAGVAAELGLRAYLGPCYMSGMSYWQADGTLAHHW
DKARGMAGLDAAERFFRDFDGAHNGLIRGALLPDRIQTCTPALLQRTAALSRELNAPMRL
HCCQGLGEVAMVEQLHGTSPLGWLQQLGLLAPRSLLPHGIYTRGDDDLQRVVDGGASLVH
CPVVFARDGEALNSFGRYRAKGINFALGTDTWPADLLDNMRQGLNIARLMEGGNDLTSTL
DLYNAATLGGAKALGRDDLGRLAPGAKADITVFNLRGMHLGPLFDPLKNLVLAGRGDDCI
ASYIDGRCVMRDGQVEGLDYPALQRQAQRQFEKLMRSHSDRAFGQPDWKSLFQPAIPFAD
DYSAQAPLSAIDPLL