Protein Info for PfGW456L13_2811 in Pseudomonas fluorescens GW456-L13

Annotation: Putative alkanesulfonate metabolism utilization regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 PF00392: GntR" amino acids 15 to 76 (62 residues), 63.9 bits, see alignment E=1.3e-21 PF07702: UTRA" amino acids 98 to 237 (140 residues), 131.4 bits, see alignment E=3.2e-42

Best Hits

KEGG orthology group: K03710, GntR family transcriptional regulator (inferred from 95% identity to pfo:Pfl01_3164)

Predicted SEED Role

"Putative alkanesulfonate metabolism utilization regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QKY3 at UniProt or InterPro

Protein Sequence (250 amino acids)

>PfGW456L13_2811 Putative alkanesulfonate metabolism utilization regulator (Pseudomonas fluorescens GW456-L13)
MTDNVLSLSSVPLHTQLRDVLRARILDGEYPQDSQMPSESELGALFKVSRITVRQALGDL
QKEGLIFKIHGKGTFVAKPKTFQNVSTLQGLAESMTDRGYEVINRLRSFKFIAADKLVAE
RLQVAEGEVVAQIKRVRLINREPVSLEITYLPKAIGERLEKADLVTRDIFLILENDCGLA
LGHADLAIDAVLADSDLTHALNVEPGSPIMHIERLTHDVDGRPLDFEHLYYRGDAFQYRL
RIDRQKGEQA