Protein Info for PfGW456L13_2752 in Pseudomonas fluorescens GW456-L13

Annotation: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 478 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 35 to 54 (20 residues), see Phobius details amino acids 63 to 82 (20 residues), see Phobius details amino acids 93 to 114 (22 residues), see Phobius details amino acids 136 to 159 (24 residues), see Phobius details amino acids 180 to 197 (18 residues), see Phobius details amino acids 203 to 223 (21 residues), see Phobius details amino acids 229 to 247 (19 residues), see Phobius details amino acids 253 to 272 (20 residues), see Phobius details PF02233: PNTB" amino acids 8 to 475 (468 residues), 631 bits, see alignment E=6.7e-194

Best Hits

Swiss-Prot: 61% identical to PNTB_RHORU: NAD(P) transhydrogenase subunit beta (pntB) from Rhodospirillum rubrum

KEGG orthology group: K00325, NAD(P) transhydrogenase subunit beta [EC: 1.6.1.2] (inferred from 96% identity to pba:PSEBR_a152)

Predicted SEED Role

"NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)" in subsystem Phosphate metabolism (EC 1.6.1.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.6.1.2

Use Curated BLAST to search for 1.6.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QQW6 at UniProt or InterPro

Protein Sequence (478 amino acids)

>PfGW456L13_2752 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) (Pseudomonas fluorescens GW456-L13)
MSMNLVTSLYLIASVCFIQALKGLSHPTTSRRGNLFGMLGMGLAILTTVGLIYKLGSELA
QDGIVYVIVGLLIGGTAGSIMAKRVEMTKMPELVAFMHSMIGLAAVFIAVAAVVEPQSLG
IVKQLGDAIPAGNRLELFLGAAIGAITFSGSVIAFGKLSGKYKFRLFQGAPVQFSGQHKL
NLLLGLATLGLGVTFMLTGDYTAFGVMLALAFVLGVLIIIPIGGADMPVVVSMLNSYSGW
AAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVLLGGFGNTADAAGPAGS
KEARPVKSGSADDATFLLTNADTVIIVPGYGLAVARAQHALKELTEKLTHRGVTVKYAIH
PVAGRMPGHMNVLLAEAEVPYDQVFEMDDINSEFGQADVVLVLGANDVVNPAAKNDPKSP
IAGMPILEAFKAKTIIVNKRSMASGYAGLDNELFYLDKTMMVFGDAKKVIEDMVKAVE