Protein Info for PfGW456L13_2734 in Pseudomonas fluorescens GW456-L13

Annotation: putative oxygenase subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF17885: Smoa_sbd" amino acids 148 to 255 (108 residues), 147.2 bits, see alignment E=1.8e-47

Best Hits

KEGG orthology group: None (inferred from 68% identity to aci:ACIAD2675)

Predicted SEED Role

"putative oxygenase subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QQN1 at UniProt or InterPro

Protein Sequence (412 amino acids)

>PfGW456L13_2734 putative oxygenase subunit (Pseudomonas fluorescens GW456-L13)
MRRIAIVGAGQAGLQLALGLLAKGYHVTLTTNRNGEDIRNGKVMSSQCMFNAALQSERDL
GLNFWEDQCPAVEGIGLTVPDPENPNEPLFSWSARLDRYAQSVDQRLKMPVWLDEVVKRG
GEVVIQDVGVAELEQLSASHDLVLLAAGKGEIVNLFEKDTERTQFQQPQRALSLTYVKGM
TPMSPFSRVSFNLIPGVGEYFVFPCLTTTGPCEIMVFEGIPGGPMDCWQGITSAEQHLEK
SLELVNRYVPWEAERCRSVELTDDKGFLSGRFTPMVRKPVLTLPSGRKVFGMADALVVND
PITGQGSNNAAKCSKVYLDAIVTRGAQNFGPEWMHDTFEQYWSYARHVVKWTNTMLTPPP
QHLLELLGAASQSKPLASAIANGFDDPRNFAPWWFDAQSCQAFIQEKTHQAA