Protein Info for PfGW456L13_2730 in Pseudomonas fluorescens GW456-L13

Annotation: benABC operon transcriptional activator BenR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 PF14525: AraC_binding_2" amino acids 36 to 213 (178 residues), 151.4 bits, see alignment E=3.5e-48 PF12833: HTH_18" amino acids 259 to 339 (81 residues), 73.6 bits, see alignment E=2e-24

Best Hits

KEGG orthology group: None (inferred from 54% identity to acd:AOLE_09985)

Predicted SEED Role

"benABC operon transcriptional activator BenR" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QQ39 at UniProt or InterPro

Protein Sequence (342 amino acids)

>PfGW456L13_2730 benABC operon transcriptional activator BenR (Pseudomonas fluorescens GW456-L13)
MSLNLIPENCGSLFNRASLFTPENQLFLLNDLDAIREGVSSVFKNHELRCIRETDRISAR
MHHVNRGRLSLNRLEYGARVNIDPGRLEDFFLIQIPISGKAHIICGDHDFISTPYKASLI
SPNLPLSMCWDANAPQLALRIERSEVEYHCAQHLGHVMDRSLEFQPELDLTTPSGSYFLQ
LIAMLADAITSNQHPLHHSLVLKQFESVLINALIYGQPNNLREQLESASKPKALLPYFVK
RTEEYMRTHANEPLSIEQLAEHAGVSVRTLFAGFRDFCDTTPMAYLRNLRLEQVHLELST
QSHDASVTDIAFKWGFVHLGRFAQEYKKRFGEAPSTTLRFRS