Protein Info for PfGW456L13_2728 in Pseudomonas fluorescens GW456-L13

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 32 to 54 (23 residues), see Phobius details amino acids 123 to 144 (22 residues), see Phobius details PF06472: ABC_membrane_2" amino acids 1 to 141 (141 residues), 71.6 bits, see alignment E=1.1e-23 PF05992: SbmA_BacA" amino acids 2 to 191 (190 residues), 82.3 bits, see alignment E=7.1e-27 PF00005: ABC_tran" amino acids 225 to 357 (133 residues), 49.4 bits, see alignment E=1.2e-16

Best Hits

Predicted SEED Role

"ABC transporter ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (416 amino acids)

>PfGW456L13_2728 ABC transporter ATP-binding protein (Pseudomonas fluorescens GW456-L13)
VVSLFSFLHILWQASGLVSVPFAGESVVIPGLLVWIALVYALLGTGLAFWLGRALPRLNF
MQQRREADFRFSLMRLRENADSVAQYRGEATENARFNQRLEAALENFWTLVKKQKLIMGY
STFYLRSATVIPMFIMAPQFFAGAFPLGRLTQISAAFGEVHSAIAYLVEVFPELSAWKSV
IDRLIGFQERLDKVEVKSNVVVGQQPKGLQIKDLDIWLPNGRRLLNSFNLSLEPGDSLLI
SAPSGYGKSTLIRTVTGLWPHARGCASYDRERALTLSQKPYLPLGSLREALWYPNQPDRD
ADAALRLHMQHVGLQHLSEQLDDELDWSQILSVGEQQRCAFVRALLARPAVLFLDESSSA
LDAANEARCYQLLKQTLPETILISVGHNASLERFHWQVLELQSEAQWVHRKVMQPV