Protein Info for PfGW456L13_2711 in Pseudomonas fluorescens GW456-L13

Annotation: cell processes; transport of small molecules; amino acids, amines, peptides

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 transmembrane" amino acids 34 to 56 (23 residues), see Phobius details amino acids 65 to 88 (24 residues), see Phobius details amino acids 113 to 137 (25 residues), see Phobius details amino acids 153 to 174 (22 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 231 to 248 (18 residues), see Phobius details amino acids 269 to 291 (23 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 370 to 391 (22 residues), see Phobius details amino acids 398 to 421 (24 residues), see Phobius details amino acids 440 to 461 (22 residues), see Phobius details amino acids 467 to 486 (20 residues), see Phobius details PF13520: AA_permease_2" amino acids 33 to 472 (440 residues), 168.8 bits, see alignment E=2e-53 PF00324: AA_permease" amino acids 54 to 482 (429 residues), 59.2 bits, see alignment E=3.2e-20

Best Hits

KEGG orthology group: None (inferred from 78% identity to rhi:NGR_c21460)

Predicted SEED Role

"cell processes; transport of small molecules; amino acids, amines, peptides"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293Q0I2 at UniProt or InterPro

Protein Sequence (517 amino acids)

>PfGW456L13_2711 cell processes; transport of small molecules; amino acids, amines, peptides (Pseudomonas fluorescens GW456-L13)
MNPASQPGTETHDDDVKVLHSMGYAQQLSRRMGVFSNFAISFSIICILSGGINSLAQGTS
GAGGASIGIGWPIGCLISGVFAMAMAQISSAYPTAGGLYHWGSILGNRFTGWLTAWFNLL
GLVTVLGAINVGTYYFFFGAFGPALGMEDTTTVRVIFLAILTGLQALCNHLGIGLTAKLT
DFSGYLIFATALALTIVCLISAPSYEFARLWTFGNYSGEAGGSVWPQVSNGWVFMLGLLL
PIYTITGYDASAHTSEETRNAAMSVPRGMVMSVVWSLLFGWLMLSAFVLMLPNMDEAAKQ
GWNVFFWAMNTQVNPTLKLVLFVAIFISQVLCGLATVTSVSRMIFAFSRDGGLPCSKALS
SVSSTHRSPVAAIWTGATLAVLFVWGSSVISIGTTPVYTIVVSCTVIFLFFSFAIPIALG
LFTFGTSKWPTMGPWNMGRFWYSVFAILSILAMIIIFVIGIQPPNDWALYITIGFLILTA
IVWFGFEARRFQGPPVGDMIVKRQAEIAAAEAALDRK