Protein Info for PfGW456L13_2663 in Pseudomonas fluorescens GW456-L13

Annotation: Membrane protein, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 transmembrane" amino acids 25 to 46 (22 residues), see Phobius details amino acids 72 to 93 (22 residues), see Phobius details amino acids 101 to 120 (20 residues), see Phobius details amino acids 126 to 154 (29 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 203 to 223 (21 residues), see Phobius details PF06912: DUF1275" amino acids 28 to 217 (190 residues), 123.7 bits, see alignment E=4.4e-40

Best Hits

KEGG orthology group: None (inferred from 83% identity to pfo:Pfl01_3574)

Predicted SEED Role

"Membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QKI0 at UniProt or InterPro

Protein Sequence (234 amino acids)

>PfGW456L13_2663 Membrane protein, putative (Pseudomonas fluorescens GW456-L13)
MLPNTARTHASPGHLHTQKWRGRIGLSLVAMLSVLAGMTDAIGFMASGDFVSFMSGNTTR
MAVAISTGDLGLTLRLVILIATFIVGNALGIIVSRLGRRRTLPLLLCIAALLCAAAAWPY
DEQLPALLAAIIAMGMLNAAVEEVNGLPVGLTYVTGALSRFGRGLGRWMLGERRSGWRVQ
LIPWTGMFAGAVLGAVLEHHLGLKALFASGLLAAGLGVLSLKIPRRWQLGYMPR