Protein Info for PfGW456L13_265 in Pseudomonas fluorescens GW456-L13

Annotation: General secretion pathway protein E

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 490 TIGR02533: type II secretion system protein E" amino acids 6 to 487 (482 residues), 667.2 bits, see alignment E=6.9e-205 PF00437: T2SSE" amino acids 117 to 383 (267 residues), 353 bits, see alignment E=4.8e-110

Best Hits

Swiss-Prot: 67% identical to GSPE_PSEAE: Type II secretion system protein E (xcpR) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 68% identity to pap:PSPA7_1415)

Predicted SEED Role

"General secretion pathway protein E"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QGS6 at UniProt or InterPro

Protein Sequence (490 amino acids)

>PfGW456L13_265 General secretion pathway protein E (Pseudomonas fluorescens GW456-L13)
MSELCEQLPFGFARRFGVLLEHDGDDLRLALRSDAPLTALAEARRVCGRALPFQIVGADE
YALRLAAAYREGRSAVEQVAQGLDEELDLLSLVDQVPQTADLLEQQGDAPIIRLINALLG
EAVREHASDVHLETFEQYLSVRMRVDGQLREMLRPKRELATLLVSRIKVMARLDIAEKRV
PQDGRMALRLAGHEVDVRVSTLPSAHGERVVLRLLDKQAGRLDLHRLGMPDDILAALRHL
LGKPHGIVLVTGPTGSGKTTSLYAALSSLNDQTRNILTVEDPIEYHLPGVGQMPVNPKVD
MTFARGLRAILRQDPDVVMVGEIRDRETAEIAVQASLTGHLVLSTLHTNSAAGAVTRLVD
MGVDAYLLASSLVGVLAQRLLRTLCPHCKVSYLADAAACQRLGLDTSTPHTLFKASGCEQ
CQHGYRGRIGIYELISVTPAVSALIHQGASEQILVDETRKVSRSLFQDGRQRVLEGLTSL
DELLRVTQEN