Protein Info for PfGW456L13_2601 in Pseudomonas fluorescens GW456-L13

Annotation: Uncharacterized protein YtfM precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 575 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF17243: POTRA_TamA_1" amino acids 27 to 99 (73 residues), 72.4 bits, see alignment E=4e-24 PF07244: POTRA" amino acids 188 to 250 (63 residues), 42.8 bits, see alignment E=1e-14 PF01103: Omp85" amino acids 295 to 572 (278 residues), 135 bits, see alignment E=6.7e-43

Best Hits

KEGG orthology group: K07278, outer membrane protein (inferred from 90% identity to pfo:Pfl01_3647)

Predicted SEED Role

"Uncharacterized protein YtfM precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QKE1 at UniProt or InterPro

Protein Sequence (575 amino acids)

>PfGW456L13_2601 Uncharacterized protein YtfM precursor (Pseudomonas fluorescens GW456-L13)
MKFPGRITSGVLMLMTSCAALAQSELDVRIKPSNDELKANIEGYIGSLGDRDEEALLRFS
RGAEEQARKAAQALGYYQPHIDSEVKGGEKPRLVLTVDPGEPVHLRNVTVRVDGPAASLK
AFRIPKSDALKPGAVLNHGHYEDAKRLIQNQASRYGFFSGRFTRSKLSVDPRAGVADIEL
IYESGPRYTLGKVSFEGDTPFDDELLQRMVPFKTGTPYDSELIAELNQNLQSSGYFEGVR
VDAAPTASRDEAIPVDVKLETRKPRTMGLGLGFSTDVGPRAKANWTRHWVNAQGHSYGWE
TEVSAPRQNVGLFYDIPLDPPLTDKLRFAGGYQNEEIADKDSHSKLLTLGPEWHSKLPSG
WQRVVSLKWQREDYQLGDDSGLSTLLMPGVSYSYLKSDNRIDPHNGYRLQFESKVAKEGL
GSDSNVLYGTALVKGLTTVFDKHRLLGRVQVGGSATNGFKSVPPSLRFFAGGDQSVRGYD
YQSLSPENSDGDRIGGRYMVAASAEYQYSIAEKWRIATFVDQGNSFNTLELPNLKTGVGI
GVRWVSPVGPIRLDLAHALDDDGGIRLHFSMGPEL