Protein Info for PfGW456L13_258 in Pseudomonas fluorescens GW456-L13

Annotation: General secretion pathway protein L

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 368 transmembrane" amino acids 217 to 236 (20 residues), see Phobius details PF05134: T2SSL" amino acids 46 to 178 (133 residues), 53.6 bits, see alignment E=2.1e-18 PF12693: GspL_C" amino acids 217 to 365 (149 residues), 53.3 bits, see alignment E=3.2e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QIX7 at UniProt or InterPro

Protein Sequence (368 amino acids)

>PfGW456L13_258 General secretion pathway protein L (Pseudomonas fluorescens GW456-L13)
MNTWLYLTAEGQDAPSGLWPCVLWSPTCQRQPMPLNQAASALQGQAVDVLLPMELCSWVR
SEPWLSRRKPEAQAMAYAVEDQLSEALEVVHLSVGARDRDGCYPVMVIGRERLAAVLDLL
REAGIEVRGVFVDADLLSGDQPCGAWWFGRWLLGAGLSARLAMSQDDLKLLTQSLPNDMQ
WLDERESPAVIDQCLTQRPTRAINLLQGAFAPRGKRLPWRAGGWALLMLALLTWGASETR
IRFLDSEASRLAVQNELRFKTLYPEQSRIVDMAAQLKALQSQPVESQNTRIAGLVRLIEQ
VIGASPVEVQRVEFRAGEGWKIQLTASGFTELEQLRERGRQQGMPVKLDSANKAADRVHA
TLTVEDEA