Protein Info for PfGW456L13_2576 in Pseudomonas fluorescens GW456-L13

Annotation: VgrG protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 473 TIGR03361: type VI secretion system Vgr family protein" amino acids 17 to 438 (422 residues), 299.7 bits, see alignment E=3.8e-93 TIGR01646: Rhs element Vgr protein" amino acids 20 to 438 (419 residues), 206.8 bits, see alignment E=6.5e-65 PF05954: Phage_GPD" amino acids 28 to 316 (289 residues), 198.9 bits, see alignment E=6e-63

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QMP7 at UniProt or InterPro

Protein Sequence (473 amino acids)

>PfGW456L13_2576 VgrG protein (Pseudomonas fluorescens GW456-L13)
MHNDKDSPTTLTLLEDDLSFQVVRFSGHEALNQPYRFDIEVIGLAPALNLERLLHQPAFL
EFGHDQGIHGVLDSASCEHRSGHRVAYKLVLVPRVQVLEQQRCRRIFQHASVPMILRQLL
EEHGLPASSYRFELATRHYPLRPFCIQYEESDLALLQRLCEEEGIHYHFEHQRDGHVLVL
ADDSLSFPQEPLLMSMSGGAPGEHQEPVISELFQRHDATLSPVRPGARNPGAADISEGAA
NHSFATARHCPAGEQQHRDQLSRRQLERLRCRHQQIHGQSSQGALRSGRILQVAEHPLAN
FNDQWLVTEIRHQGCQSSILLDDTPGTASGYRNQFSAIPWSTVFRPALKQPRPNIPGYQP
GRVCGPVGQPAAVDEDGRVQVNLWPATQPDAEESNGLWLPLALTTAEDWIDPARLPVAGS
EVLVIFLDSDPDRPVLCTVMGPRPQPHRPRPHEPRGDTRLLFDWLLTRSDPAP