Protein Info for PfGW456L13_2566 in Pseudomonas fluorescens GW456-L13

Annotation: Outer membrane autotransporter barrel domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 875 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF18883: AC_1" amino acids 344 to 453 (110 residues), 100.3 bits, see alignment E=6.6e-33 TIGR01414: outer membrane autotransporter barrel domain" amino acids 356 to 875 (520 residues), 231.7 bits, see alignment E=8.7e-73 PF03797: Autotransporter" amino acids 604 to 851 (248 residues), 142.8 bits, see alignment E=1.7e-45

Best Hits

KEGG orthology group: None (inferred from 54% identity to psb:Psyr_2492)

Predicted SEED Role

"Outer membrane autotransporter barrel domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QMN9 at UniProt or InterPro

Protein Sequence (875 amino acids)

>PfGW456L13_2566 Outer membrane autotransporter barrel domain protein (Pseudomonas fluorescens GW456-L13)
VGALSLLSLAVQQAQAACVLTPGPGVDAYVCDSGSSPVGLTDLLGNNILTLPIDGTGTIN
GNIVTGAGTDLVDMISGRIVGSITQGDGADRFRISAGAVTGAVSQGNGIDDFVMSGGQIQ
SLAQGDGRDTFLMTGGTIVGAFEDGDVAQQTSGTIGRVDMKLDNNIYDMSGGSILGNLVT
GFGTDWIIVTGGTIGGNISVSGGDDRITVSGGVINGEIRTSLGNDTFNWLNGGQIKSAVL
MGDGNDTALLSGLTESLLSATPSIDGGLGNDQLTFDNTTSNTASRYIGWETVSLNNNSHF
DLAGDFFLGDSASNAGTVSIDNTSVLAVTQGSIRPYTAGQRATLINAGTIDMTTGSNSAA
DSLTVYGNYVGNNGQLWLQTVLGDDTSATDKLVVSDGTISGNTQLAVTNLSGLGGLTQNN
GIEVVQALNGAVSTTDAFALKGSVSAGAYEYYLFKGGVTAGSENNWYLRSSVAAVQPPVV
PPPTPVPQVVVPVPPIPPTPPVVTPDEPPVEPPTSRPVAPVEPTAPPLNQIPAETSPEPA
VSTPPLPTAMAGADPIPLYRLEVPVYSVVVPAAQLMTLQALGTFHDRQGEQSLLSETGAV
PAGWGRAYGRDFNKSWTGTVSPSFDGSTKGYQVGHDLYASETSGGQIQRFGLFVGQSRLQ
GDVKGFAEGFQDRRSGRAELDGDNFGAYWTLTDPTVGWYVDLVAMGTRLDGDNKSDRGVK
MDSKGHALALSAEAGYPIAISEHWVVEPQVQVINQQIDMDSQNDGISKVSFDSQDYWTGR
LGARLKGRYLVQNTPIEPYVRANAWRTFGGSDTVTYDDVDRIKSDHKSSSADLGVGVVAR
LSSTVSVYLAADYNTNLDTNALEGVSGNAGVRVSW