Protein Info for PfGW456L13_2564 in Pseudomonas fluorescens GW456-L13

Annotation: Hemolysin-type calcium-binding region

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3565 PF03098: An_peroxidase" amino acids 440 to 721 (282 residues), 124.2 bits, see alignment E=6.1e-40 amino acids 784 to 864 (81 residues), 46 bits, see alignment (E = 3.1e-16) amino acids 1962 to 2246 (285 residues), 132.7 bits, see alignment E=1.6e-42 amino acids 2307 to 2383 (77 residues), 45.1 bits, see alignment (E = 5.8e-16) PF00353: HemolysinCabind" amino acids 932 to 964 (33 residues), 33.8 bits, see alignment (E = 2.6e-12) amino acids 968 to 997 (30 residues), 19.5 bits, see alignment (E = 7.8e-08) amino acids 1073 to 1102 (30 residues), 14.5 bits, see alignment (E = 2.8e-06) amino acids 1218 to 1246 (29 residues), 13.7 bits, see alignment (E = 5.1e-06) amino acids 2449 to 2483 (35 residues), 33.2 bits, see alignment (E = 4e-12) amino acids 2485 to 2518 (34 residues), 21.1 bits, see alignment (E = 2.5e-08) amino acids 2520 to 2549 (30 residues), 11.5 bits, see alignment (E = 2.4e-05) amino acids 2587 to 2614 (28 residues), 16.8 bits, see alignment (E = 5.7e-07) amino acids 2718 to 2744 (27 residues), 15.6 bits, see alignment (E = 1.3e-06) amino acids 3080 to 3114 (35 residues), 27.6 bits, see alignment (E = 2.3e-10) amino acids 3107 to 3140 (34 residues), 26.8 bits, see alignment (E = 4.2e-10) amino acids 3189 to 3222 (34 residues), 30.2 bits, see alignment (E = 3.5e-11) amino acids 3280 to 3313 (34 residues), 35.8 bits, see alignment (E = 6.3e-13) amino acids 3371 to 3403 (33 residues), 37.5 bits, see alignment (E = 1.8e-13) amino acids 3452 to 3486 (35 residues), 26 bits, see alignment (E = 7.1e-10)

Best Hits

Predicted SEED Role

"Hemolysin-type calcium-binding region"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293Q034 at UniProt or InterPro

Protein Sequence (3565 amino acids)

>PfGW456L13_2564 Hemolysin-type calcium-binding region (Pseudomonas fluorescens GW456-L13)
MANFSKSDLEFILKQIFIAEANAAGTSLIDLLPNTQVPFGLRTVDGSFNNLVTGQSDFGA
ADADFPRLLDPSFLSAQYAGTGTVIDPQPRIISNLVVDQTANNPAAYASAFDPGLDGVLN
FGTVGNDDVLKDGVQIVTSPGLDGVFGTADDKDVFFMPNVSPDVGLTASFNSWMTFFGQF
FDHGLDLVTKSTTDVVFIPLQADDPLFVPGSLTNFMVLSRAVHTAGADGVVGTADDGQTN
TTSPFVDQSQTYASHPSHQVFLREYVINAAGDPVATGRLITNRDLGPDGRFGTADDGDGE
NGGMATWAVVKAQARDILGINLTDADVHNVPLLATDAYGNFIRGPNGMPQVVIRISNGAD
GIAGTADDVTQLVEGNLAAPISLANAVSTGHGFLDDIAHNAAPVVVGGVLQADADIAIGN
AQPVGPGGNNLTYDNELLDAHYIAGDGRVNENIGLTTVHHVFHSEHNRLVQQSKDTIIAA
GDLAFLNEWLVDDVAAIPTTPAEIAALVWDGERLFQAAKFGTEMQYQHLVFEEFGRTIQP
QIDEFLAPSGYDTSINPAILAEFAHVVYRFGHSMLTETVDRFDPAFNPLLTDPTNPDSQL
GLIAAFLNPLAFASSGVTADQAAGAIIRGVTRQVGNEIDEFVTEALRNNLLGLPLDLPSL
NLARGRDTGIPTLNEARREFYASTGDSQLKPYISWADLADSLKHPESLVNFIAAYGTHST
ITAATTLADKRAAAFALVFNGAGSPADRLDFLNSTGAYANVTLAGADGVLGTADDLTGVT
VTGVDDIDFWVGGLAEQKMPFGGMLGSTFNFVFETQMEALQNGDRFYYLARTAGLNFGAE
LENNSFAKLIMLNTDVTHLSNTVFLTPTFTLEVDQTAQFTGLGVDGRADPTGGIMINGVE
VVSLVIRDNPDTVGPDTNYLQYTGEDHIVMGGTAGNDIIISGEGDDTLYGDGGNDRLEGG
AGNDAVLGGAGDDIISDSFGDNRLEGNDGNDVIVAGSMLAGGNLILGGDGQDFIITTEDI
SLSFGGQGDDFILGAKTNLPATGGEGDDWIEKGTQDGAPGDNASPLLNDDVIGNDIFTGG
GGFDEMIGEGGDDIFVGSDAQDKMDGMSGFDWVTYKNDRVGVTADLSMAALAQPHGNTPS
QNAGIFNPVGASPASILDRFAEVEGLSGSSFGDVLRGDDVDADTIINHGGTTGSALTNVA
LIRGLDQFLADAGLPVTGFATGNIILGGDGSDLIEGRGGDDLIDGDKWINVRIAVYDPAD
VNHTGPEIASFDSMVDMIPLMLDGTINPGQLKAVREIMPGTSTGGAAFDTAIFSGLEAEY
AVTVDDRGTDDVSDDVWTVADSVAGRDGTDTLLNIERLQFADNQQVLVAGENAQPDGSPT
VSDGNGGAITVGDLLTVSVAGVSDDDNVAAGNPQGLITNSSVSYIWQFEADPGSGIFEDI
ILLPAGDLAFQSANGTAFKVSPDLAGLSLRVKAIYQDGHGTTEILFSTPTAAVVAGAPVT
PTAQVPVVDATAGGAGLHMVRSDLNFILDQIKIAEADAAGQDILSLLPNIRAPLGLRTVD
GSSNNLMNLNGIDNTEFGAADNLFPRVGDPVFNPAEGGTSYAQNNGIVIDSQPRTISNLI
VDQTANNPAAYATAFDPGLDGVLNFGAVGNDDVLKEGVQIVASPGLDGQFGTGDDRDVYL
FENTTSDAGLSAPFNAWMTFFGQFFDHGLDLVTKGGSGTVFIPLQPDDPLFVPGSLTNFM
VLTRATNQPGADGVLGTADDIHEHTNTTSPFVDQNQTYSSHPSHQVFLRGYELTASGPVA
TGRLITNRDLGVDGTFGTADDVEIGGMATWKVVKAQARDVLGINLTDADIDSGPLLATDA
YGNFIKGPNGFPQVVIRVNNGADGIAGTADDVTTLVEGDPANPVSLVNAVRTSHAFLNDI
AHNAVPVVTGGVLQADADTLVGNAQPVGPGGNNLTYDNELLDAHYIAGDGRVNENIGLTA
VHAIFHSEHNRLVAQTKDTVLDSGDVAFLNEWLLTPVAALPTTQAEFDALQWNGERLFQA
AKFGTEMQYQHLVFEEFARTIQPNIDLFFAPTQVYDVDLDPSIVAEFAHTVYRFGHSMLT
ETVDRFDIDFNVIGDPSSANPDQQLGLIAAFLNPLAYAASGVSPEDATSAIIRGVTRQAG
NEIDEFVTEALRNNLLGLPLDLPAINIARGRDVGIPSLNAFRRDIYSQTGDTQLKPYNSW
VDLVQHLKHPESLINFIAAYGTHDTITAATTLEGKRAAAMALVFGGVGAPADRLDFLNST
GAFANVTLAGSDGVLGTADDLRNVTITGVDAIDMWIGGLAEQKTPFGGMLGSTFNFVFEN
QMEKLQDGDRFYYLERTAGLTMNAELESNSFAKLIMANTSATHLPGVVFTDPGFYLEVDQ
GRQFNEGLLAVDPLGPNGAQVVFRDNPLTVGADTNYIKYTGDEHIVLGGTENADILIASE
GDDTVWGDGGNDRIEGGDGNDQLRGGAGDDIITDTGGDDNVQGGDGNDVLHGGNGVNLLI
GGFGNDFIITGEDASEAIGGQGNDFILGSKANEQDMGNEGDDWIEKGTSDGAPGDNFDPL
GNDPVIGHDVYIGGSENDKFNGEGGDDIMVGSLGFGDRYIGGSGYDWATFKGLAQGVSVD
YTDRFFDVPPMPGSGASALVRFDIMEGLSGSSHGDFLRGDNEDATSLPTAGATGSVLTNI
SLINGLAGLLPAGATFFDGGNIILGGSGSDLIEGRGGDDIIDGDKWLNVRISVRANADGT
GAEIATFDSMEPMVQAMLNGTYNPGQLVIVREILTGTDNFDTALYSGNASEYTVAVDGNT
VIVTDLVAGRDGVDRLTGIERLQFADQAQASGVGTVSNSAPVGRLAILDATTGARVDSPV
AGQLLRVSSQSIRDANSVSAANPTGAVTGPVSYYWQAETIAGSGIFEDITVLAAGEASRV
TGATYLVADDVAGLNLRVRAVYQDGSSTLEIVDSSANNAPTAGPGILGFAFLNQVLTADP
STIVDVDGLSNPQFTFQWQETNGVTFVDIVGATGSTLTLGQNQVGDQVRVVVSYVDDFGV
AESIASDATAPVTVGVVFVGTPGVDIFIGTQGDDVASGGDGNDILNGLGGNDILNGDAGN
DVLIGGGGADTMAGGVGDDIFEVTDLGDVVTELAGAGSDSVWTSLASYTLGADVENLFFG
GSGNFAGTGNALGNTLVGGAGNDVLIGGAGADTMTGGVGIDIYEVTDLGDVVSELAGAGS
DSVWTSLASYTLGANVENLYFGGSGNFAGSGNELNNTIAGGAGNDVLIGGSGNDVIIGRA
GADTMAGGIGSDVYEVTDLGDVVNEFAGAGSDSVWTSLSSYTLGASVENLYFGGSGNFAG
SGNELNNTIVGGAGNDVLIGGAGNDVIIGRAGADTMAGGIGSDIYEVTDLGDVVNELAGA
GSDSVWTSLASYTLGADVENLFFGGSGNFAGTGNGLANTIEGGAGNDVLTGGGGNDVMSG
GVAGNDTFAFAAGFGSDTILNFGANPAGQDLLNITALGINSATFAANVTITANGADTVVG
IGADTIHLVGVNSAAVDQTDFILTT