Protein Info for PfGW456L13_2525 in Pseudomonas fluorescens GW456-L13

Annotation: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 PF00890: FAD_binding_2" amino acids 25 to 516 (492 residues), 132.8 bits, see alignment E=2e-42 PF01266: DAO" amino acids 25 to 218 (194 residues), 40.8 bits, see alignment E=2.2e-14

Best Hits

KEGG orthology group: None (inferred from 49% identity to ctt:CtCNB1_1358)

Predicted SEED Role

"Fumarate reductase flavoprotein subunit (EC 1.3.99.1)" in subsystem Succinate dehydrogenase (EC 1.3.99.1)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.3.99.1

Use Curated BLAST to search for 1.3.99.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QMK0 at UniProt or InterPro

Protein Sequence (559 amino acids)

>PfGW456L13_2525 Fumarate reductase flavoprotein subunit (EC 1.3.99.1) (Pseudomonas fluorescens GW456-L13)
MDSLNGLTALRVNSADQLPWDDRCDLLIVGFGGAGACAAIEASTRGLSVLALDRFEGGGA
TALSGGVVYAGGGTPYQRQAGYEDTSEAMFNYLRQEVGEAVSHATLRNFCDGSREQLAWL
ERQGAAFEASVPPHKTSYPSDQYYLYYSGNEAVPAYAASAKPAPRGHRTKGPGMSGASLF
APLKASALRHGARLRSQCEVRRLVLDLDDKVIGVEAWQLPSGSRAARQHARLSRWAAAIH
MYAPALADRLRARQRRIEQTSAIRQLIRAEQAVLLSSGGFIFNRDLVRQHAPQYLAGLPL
GATGCNGSGIALGQSAGGSVARMDKISAWRFINPPLAWARGLIVNARGQRYANEEIYGAT
LGHAMVEEQDGRAILVLNRELMREALRQVGPGKVWNFQRLPVLLNLLFNAKRSNTLAGLA
KRCNLPPELLRQSVERYSRAAHGEVADEFGKSAAMLANLDQGPWYALDLSFDSKLFPCPV
ITLGGLKVCEDSGRVLDHAGQPINGLYSAGRNAVGVASNLYVSGLSLADCIYSGRRAAAH
VADQFALQTARSGEQQCNV